Locus 15687

Sequence ID dm3.chrX
Location 20,395,777 – 20,395,896
Length 119
Max. P 0.600835
window21620

overview

Window 0

Location 20,395,777 – 20,395,896
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 93.84
Shannon entropy 0.08488
G+C content 0.46627
Mean single sequence MFE -35.73
Consensus MFE -30.21
Energy contribution -30.00
Covariance contribution -0.21
Combinations/Pair 1.17
Mean z-score -1.77
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.22
SVM RNA-class probability 0.600835
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20395777 119 + 22422827
UCCGGGCUCAAUGCUUGAACAGAUGGCGUCUGCAUCGGACGCUGCCUUGGCGGGUUCUUGCGUUCUUCGCUGUAGAUAUACGCCGUACUUUUCAAGUACAAACUUGUUUUUUUUUUAAU
..((((.....((((((((.((((((((((((((..((((.((((....))))))))..(((.....)))))))))....)))))).)).))))))))....))))............. ( -38.80, z-score =  -2.94, R)
>droSim1.chrX 15622445 118 + 17042790
UCCGGGCUCAAUGCUUGAACAGAUGGCGUCUGCAUCGGACGCUUCCUUGGCGGGUUCUUGCGUUCUUCGCUGUAGAUAUACGCCGUACUUUUCAAGUACAAACUUGUUUUUUUUU-AAU
..((((.....((((((((.((((((((((((((.(((((((..(((....))).....)))))...)).))))))....)))))).)).))))))))....)))).........-... ( -34.60, z-score =  -1.94, R)
>droEre2.scaffold_4690 16998829 119 + 18748788
UCCGGGCUCAAUGCUUGAGCGGAUGGCAGCUGCAUCGGACGUUUCCUUGGCGGAUGCUUGCGUUCUUCGCCGUGGAUAUACGCCGUACUUUUCAAGUACAAACUUGUUUUUUUUUUAAU
.....(((((.....))))).((((.(....)))))((.(((.(((.(((((((.((....))..))))))).)))...)))))(((((.....))))).................... ( -33.80, z-score =  -0.44, R)
>consensus
UCCGGGCUCAAUGCUUGAACAGAUGGCGUCUGCAUCGGACGCUUCCUUGGCGGGUUCUUGCGUUCUUCGCUGUAGAUAUACGCCGUACUUUUCAAGUACAAACUUGUUUUUUUUUUAAU
..((((.....((((((((.((((((((((((((.(((((((.(((.....))).....)))))...)).)))))))....))))).)).))))))))....))))............. (-30.21 = -30.00 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:01 2011