| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,383,462 – 20,383,577 |
| Length | 115 |
| Max. P | 0.592486 |
| Location | 20,383,462 – 20,383,577 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.27 |
| Shannon entropy | 0.29283 |
| G+C content | 0.44910 |
| Mean single sequence MFE | -30.23 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.68 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20383462 115 + 22422827 UGGCUAGUUGGCCAGUUGGCCAUUUGGCCAUUUUGCGAGCUCGUGUUAAUUAUA----UAUCGGAAACCACGAAAGCAUAAGGUGACUAGUUAUAGGGUUAGAGUGGCAA-GUGGUAGGC (((((....)))))((..((((((((.((((((((...((((....((((((..----(((((....)..(....).....))))..))))))..)))))))))))))))-)))))..)) ( -35.90, z-score = -1.86, R) >droEre2.scaffold_4690 16986622 94 + 18748788 ------------------------UCGGCAUUUGGCCA-UUCGUGUUAAUUAUACAUGUAUCAAAAGCCGCGAAAGCAUAAGGUGACUAGUUAUAGGGUUAGAGUGGUAA-GUGGUAGGC ------------------------....((((((.(((-(((((((.....))))..........((((((....))...((....))........)))).)))))))))-)))...... ( -26.50, z-score = -2.58, R) >droSec1.super_8 2580018 100 + 3762037 ----------------UGGCCAGUUGGCCAUUUGGUGAGCUCGUGUUAAUUAUA----UAUCGGAAACCACGAAAGCAUAAGGUGACUAGUUAUAGGGUUAGAGUGGCAAAGUGGUAGGC ----------------..((((.((.(((((((....(((((....((((((..----(((((....)..(....).....))))..))))))..))))).))))))).)).)))).... ( -28.10, z-score = -1.91, R) >droSim1.chrX_random 5320743 100 + 5698898 ----------------UGGCCAGUUGGCCACUUGGUGAGCUCGUGUUAAUUAUA----UAUCGGAAACCACGAAAGCAUAAGGUGACUAGUUAUAGGGUUAGAGUGGCAAAGUGGUAGGC ----------------..((((.((.(((((((....(((((....((((((..----(((((....)..(....).....))))..))))))..))))).))))))).)).)))).... ( -30.40, z-score = -2.31, R) >consensus ________________UGGCCAGUUGGCCAUUUGGCGAGCUCGUGUUAAUUAUA____UAUCGGAAACCACGAAAGCAUAAGGUGACUAGUUAUAGGGUUAGAGUGGCAA_GUGGUAGGC ..................((((.((.(((((((.((....(((((.......................)))))..))......(((((........)))))))))))).)).)))).... (-16.92 = -17.68 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:00 2011