| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,382,402 – 20,382,498 |
| Length | 96 |
| Max. P | 0.538689 |
| Location | 20,382,402 – 20,382,498 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 65.87 |
| Shannon entropy | 0.56135 |
| G+C content | 0.34941 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -7.53 |
| Energy contribution | -8.59 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20382402 96 - 22422827 GAUUGCGGAGCGCGAUCGUUUAAAAUUAUAUUUUCAAAUUUCAUAUAU--AUACCCGUAUUCCUGGGUGCUUUUAAUUG-GGAGACGGGUGAGUAUGCA (((((((...)))))))..........................(((((--.(((((((.((((..(..........)..-))))))))))).))))).. ( -27.50, z-score = -2.19, R) >droSim1.chrX_random 5319718 84 - 5698898 GAUUGCGGAGCGCGAUCGCUGAAAAUUAUAUUUUCAAAAUUCAAAUAU--AUAUCCGU------------UUUUAAUUG-AGAGACGGGUGAGUAUGCA (((((((...)))))))(((((((((...)))))))........((((--.(((((((------------((((.....-))))))))))).)))))). ( -25.70, z-score = -3.45, R) >droSec1.super_8 2578982 96 - 3762037 GAUUGCGGAGCGCGAUCGCUAAAAAUUAUAUUUUCCAAAUUCAAAUAU--AUACCCGUUUUCCUGUGUGCUUUUAAUUG-AGAGACGGGUGAGUAUGCA (((((((...)))))))((.......(((((((.........))))))--)(((((((((..(..((......))...)-..))))))))).....)). ( -24.00, z-score = -1.57, R) >triCas2.ChLG10 1088347 89 - 8806720 GGUCACCCAUUAACAUAGCUUAUUUUUAUAAUUUCACAUUUUCUACAUUAAUAACCGU--UCACAAAAUUUCUUGAUUAUUGACACCUUUU-------- .((((...(((((..(((........................)))..)))))......--...(((......))).....)))).......-------- ( -2.56, z-score = 0.82, R) >consensus GAUUGCGGAGCGCGAUCGCUUAAAAUUAUAUUUUCAAAAUUCAAAUAU__AUACCCGU__UCCUG_GUGCUUUUAAUUG_AGAGACGGGUGAGUAUGCA ((((((.....))))))..................................(((((((..........................)))))))........ ( -7.53 = -8.59 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:59 2011