Locus 15684

Sequence ID dm3.chrX
Location 20,366,141 – 20,366,235
Length 94
Max. P 0.650065
window21617

overview

Window 7

Location 20,366,141 – 20,366,235
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 80.32
Shannon entropy 0.34994
G+C content 0.39089
Mean single sequence MFE -22.76
Consensus MFE -17.10
Energy contribution -17.74
Covariance contribution 0.64
Combinations/Pair 1.39
Mean z-score -1.26
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.650065
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20366141 94 + 22422827
AACUUUAUCUUGCAGGGAUGCCAGGGUAACUCUAGGUUUUGGAUGAUAAUAUUUCGAACGCGAGAACAAAGUUAUGUUUCAAAAUCAUGCACUG
..........(((((((.(((....))).)))).(((((((((..(((((.(((((....))))).....)))))..)))))))))..)))... ( -20.80, z-score =  -1.12, R)
>droEre2.scaffold_4690 16970608 92 + 18748788
-ACUUUGUCUUAUAGAAUAAACAGGA-AACCCGGGAUUUAGGGCUUUAGUGUUUUGAUCGUGAGAAUAAAGUUCAGUUUCAAAAUCAUGCACUG
-((((((((((((.((..(((((..(-(((((........))).)))..)))))...))))))).))))))).((((..((......)).)))) ( -18.50, z-score =  -0.54, R)
>droYak2.chrX 19591622 94 + 21770863
AACUUUGUCUUAUAGGGUUAUCAGGGUAUGCCCAGGAUUUCGGUGAUGAUAUUUCGAUCGUGAGAAUGAAGUUAAGUUUCAAAAUCAUGUACUG
((((((((...))))))))....(((....)))..(((((.((.(((...((((((.((....)).))))))...))))).)))))........ ( -20.00, z-score =  -0.36, R)
>droSec1.super_8 2559799 94 + 3762037
AACUUUGUCUUACAGGGUUGCCAGGGCAACUCGACGUUUUGGGUGAGAAUAUUUCGAACGUGAGAACGAAGUUAUGUUUCAAAAUCAUGCACUG
(((((((((((((.(((((((....)))))))...((((..((((....))))..))))))))).))))))))..................... ( -27.70, z-score =  -2.19, R)
>droSim1.chrX_random 5303384 94 + 5698898
AACUUUGUCUUACAGGGUUGCCAGGGCAACUCGAGGUUUUGGCUGAGAAUAUUUCGAACGUGAGAACGAAGUUAUGUUUCAAAAUCAUUCACUG
(((((((((((((.(((((((....)))))))((((((((......))).)))))....))))).))))))))..................... ( -26.80, z-score =  -2.09, R)
>consensus
AACUUUGUCUUACAGGGUUGCCAGGGCAACUCGAGGUUUUGGGUGAUAAUAUUUCGAACGUGAGAACGAAGUUAUGUUUCAAAAUCAUGCACUG
(((((((((((((.(((((((....)))))))...((((.((((......)))).))))))))).))))))))..................... (-17.10 = -17.74 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:59 2011