| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,363,620 – 20,363,704 |
| Length | 84 |
| Max. P | 0.889128 |
| Location | 20,363,620 – 20,363,704 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 79.53 |
| Shannon entropy | 0.39170 |
| G+C content | 0.38363 |
| Mean single sequence MFE | -21.03 |
| Consensus MFE | -14.88 |
| Energy contribution | -14.83 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20363620 84 - 22422827 AUGG--CGGCUGUCGCUUUUGCCUUCUUUACGUUGUUCAAUUGCGUUCAAUGAGAUAAAGCUGGCAAACCACAUAGUAAUCCCAAU .(((--..(((((....((((((..((((((((((..(......)..)))))...)))))..))))))....)))))....))).. ( -20.90, z-score = -1.28, R) >dp4.chrXL_group1e 8978772 86 - 12523060 AUUGUCUGUCUGUCGUGCAGUGCGGUUUCUCGUUGUUUAAUUACGAGACGUAAAAAGCAAAUGAAGAAAUAUAUAUAAAAACAAAU .(((((((((((.....))).))))(((((((((((((..(((((...))))).)))).)))).)))))...........)))).. ( -14.70, z-score = -0.42, R) >droSim1.chrX_random 5300886 84 - 5698898 AUGG--CGGCUGUCGUUUUUGCCUCCUUUAUGUUGUUUAAUUGCGUUCAAUGAGAUAAAGCUGGCAAACCAAACAGUAAUCGCAAU ...(--(((((((....((((((..((((((.(..((.(((...))).))..).))))))..))))))....)))))...)))... ( -23.80, z-score = -2.17, R) >droSec1.super_8 2557337 84 - 3762037 AUGG--CGGCUGUCGUUUUUGCCUUCUUUAUGUUGUUUAAUUGCGUUCAAUGAGAUAAAGCUGGCAAACCAAACAGUAAUCGCAAU ...(--(((((((....((((((..((((((.(..((.(((...))).))..).))))))..))))))....)))))...)))... ( -23.80, z-score = -2.22, R) >droYak2.chrX 19589053 84 - 21770863 AUGG--CGGCUGUCGCUUUUGCCUUCUUUAUGUUGUUUAAUUGCGUUCAAUGAGAUAAAGCUGGCAAACAAAACAGUAAUCACAAU .(((--..(((((....((((((..((((((.(..((.(((...))).))..).))))))..))))))....)))))..))).... ( -22.40, z-score = -1.95, R) >droEre2.scaffold_4690 16968073 84 - 18748788 AUAG--CGGCUGUCGCUUUUGCCUUCUUUAUGUUGUUUAAUUGCGUUCAAUGAGAUAAAGCUGGCAAACAAAACAGUAAUCACAAU ....--..(((((....((((((..((((((.(..((.(((...))).))..).))))))..))))))....)))))......... ( -20.60, z-score = -1.59, R) >consensus AUGG__CGGCUGUCGCUUUUGCCUUCUUUAUGUUGUUUAAUUGCGUUCAAUGAGAUAAAGCUGGCAAACCAAACAGUAAUCACAAU ........(((((....((((((..((((((.(((((.(((...))).))))).))))))..))))))....)))))......... (-14.88 = -14.83 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:58 2011