| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,339,230 – 20,339,323 |
| Length | 93 |
| Max. P | 0.748008 |
| Location | 20,339,230 – 20,339,323 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.52246 |
| G+C content | 0.48191 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -11.31 |
| Energy contribution | -12.51 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.748008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20339230 93 + 22422827 -------AAGUCCGUUACUUGAUUUUCGCACUAACGCGUAUCACUACUGA-GCGCGCAGAGCUUUUCGUUGAUGAAAUCCACUACGUAAAGCUCGCUCUCC -------..((.((((...((((...(((......))).))))......)-))).)).(((((((.(((.(.((.....))).))).)))))))....... ( -22.60, z-score = -1.08, R) >droSim1.chrX 15596723 91 + 17042790 -------AAGUCCGUUACUCGAUUUUCCCACCAAUGCGCAUCACUACUGA-GCGC--AGAGCUUUUCGUUGAUAAAAUCCACUACGCAAAGCUCGCUCUCC -------(((((........))))).........(((((.(((....)))-))))--)(((((((.(((((........))..))).)))))))....... ( -20.90, z-score = -2.47, R) >droSec1.super_8 2533949 91 + 3762037 -------AAGUCCGUUACUCGAUUUUCCCACCAAUGCGCAUCACUACUGA-GCGC--AGAGCUUUUCGUUGAUAAAAUCCACUACGCAAAGCUCGCUCUCC -------(((((........))))).........(((((.(((....)))-))))--)(((((((.(((((........))..))).)))))))....... ( -20.90, z-score = -2.47, R) >droYak2.chrX 19564778 91 + 21770863 -------ACGUUCGUUACGUGAUUUUCCCACAAACGCGCAUCACUACUGA-GCGC--AGAGCUUUUCGUUGAUAAAAUUCACUACGUAAAGCUCGCUCUCC -------..((.((((..(((.......))).)))).)).........((-(.((--.(((((((.((((((......)))..))).))))))))).))). ( -24.80, z-score = -2.96, R) >droEre2.scaffold_4690 16943955 84 + 18748788 -------ACGUUCGUUACGUGAUUUUUCCAUAAGCGCUCAUCACUAC----------AGAGCUUUUCGUUGAUAAAAUCCAGUACGUAAAGCUCGCUCUCG -------.((....((((((((((((..((.(((.((((........----------.)))).)))...))..))))))....))))))....))...... ( -14.30, z-score = -0.29, R) >droMoj3.scaffold_6473 4036181 98 + 16943266 CUAGCCGCACUUUGCAUCGUAACGGCGCCACUUGAAAGCUUCGCGAUGAGCACUCUCAGAGCUUUGGGCACAAGAAAGCUUUUGCUC---GCGCGCUCUCG ..((((((......((((((...(((...........)))..))))))..........((((...((((........))))..))))---))).))).... ( -27.30, z-score = 1.23, R) >consensus _______AAGUCCGUUACGUGAUUUUCCCACAAACGCGCAUCACUACUGA_GCGC__AGAGCUUUUCGUUGAUAAAAUCCACUACGCAAAGCUCGCUCUCC ...................................((((.((......)).))))...(((((((.(((..............))).)))))))....... (-11.31 = -12.51 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:54 2011