| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,124,535 – 12,124,627 |
| Length | 92 |
| Max. P | 0.657250 |
| Location | 12,124,535 – 12,124,627 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 79.71 |
| Shannon entropy | 0.36608 |
| G+C content | 0.40228 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.64 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12124535 92 + 23011544 CUCCGUCUUUCUCCAUAUCUUUGCAGCUGUGAGGCGAACAAAUUUUCCUUUUUUGCCGCCCGUCUGUGGAUUUAUAUAUAUAUACACAUAUA ..............(((..((..(((.((.(.((((((.(((......))))))))).).)).)))..))..)))................. ( -14.90, z-score = -0.71, R) >droEre2.scaffold_4929 13352599 70 - 26641161 -CUCGUCUUUCUCCGUAUCUUUGCAGCUGCGAAGCGAACAAAUUUUCCUUCCUUGCCGCC-GUAUAUAAAUA-------------------- -....................(((.((.((((((.(((......)))))))...)).)).-)))........-------------------- ( -9.60, z-score = -0.42, R) >droYak2.chr2L 8542694 91 + 22324452 CUCCGUCUUUCUCCAUAUCUUUGCAGCUGUGAAGCGAACAAAUUUUCCUUUUAAGCCGCC-GUGUGUAGAUACAUAUAUAUACAUACGAGUA ......................((.(((..((((.(((......)))))))..))).))(-(((((((.(((....))).)))))))).... ( -17.70, z-score = -1.52, R) >droSec1.super_16 312873 87 + 1878335 CUCCGUCUUUCUCCAUAUCUUUGCAGCUGUGAAGCGAACAAAUUUUCCUUUUUUGCCGCC-GUCUGUGGAUAUAUACAUACAUAUAUA---- ...........((((((.....((.((...((((.(((......)))))))...)).)).-...))))))((((((......))))))---- ( -14.40, z-score = -1.09, R) >droSim1.chr2L 11922078 87 + 22036055 CUCCGUCUUUCUCCAUAUCUUUGCAGCUGUGAAGCGAACAAAUUUUCCUUUUUUGCCGCC-GUCUGUGGAUAUAUACAUACAUAUAUA---- ...........((((((.....((.((...((((.(((......)))))))...)).)).-...))))))((((((......))))))---- ( -14.40, z-score = -1.09, R) >consensus CUCCGUCUUUCUCCAUAUCUUUGCAGCUGUGAAGCGAACAAAUUUUCCUUUUUUGCCGCC_GUCUGUGGAUAUAUACAUACAUAUACA____ ...........((((((.....((.((...((((.(((......)))))))...)).)).....))))))...................... (-11.68 = -11.64 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:29 2011