| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,328,737 – 20,328,842 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 20,328,737 – 20,328,842 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.33074 |
| G+C content | 0.33881 |
| Mean single sequence MFE | -19.04 |
| Consensus MFE | -14.26 |
| Energy contribution | -15.94 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 20328737 105 - 22422827 GGCGAUAGUAAAACUUUAAGCGCAUUUAUUAAACUAAAUCGCUUGCUUUAAAAUCUGGC--CAAGCGAGUGAUUUAGAUCAAAUCUUAACUAAAAAUCUCUAAUAUG------------- .(((..((.....)).....)))..........(((((((((((((((...........--.)))))))))))))))..............................------------- ( -22.10, z-score = -2.56, R) >droEre2.scaffold_4690 16934779 120 - 18748788 GGCGAUAGUAAAACUUUAACCGCCUUCAUUAAACCAAACCGCGUGCACUGAAAUCUGCCUUAAAGCAUGUGAUUAAAGUCCAAUUUAAGCAAAACAUAUCGAAAAUAUAUUACAUUUUUC ((((..((.....)).....))))(((............(((((((..(((........)))..))))))).(((((......)))))............)))................. ( -15.30, z-score = 0.01, R) >droYak2.chrX 19555127 105 - 21770863 GGCGAUAGUAAAACUUUUACCGCUUUCAUUUCACUAAACCGCUUGCUUUAAAAUCUGGC--AAAGCGUUUGAUUAAGUUAAAGCCUUAACUAAACAUCUCGAAUAUG------------- ((..(.((.....)).)..))(((((.((((.(.(((((.(((((((.........)))--.))))))))).).)))).))))).......................------------- ( -17.20, z-score = -0.75, R) >droSec1.super_8 2523879 105 - 3762037 GGCGAUAGUAAAACUUUAACCGCUUUCAUUAAACUAAAUCGCUUGCUUUAAAAUCUGGC--CAAGCGAGUGAUUUAGCUCAAAUCUUAAGUAAAAAUCUGGAAUAUG------------- ((((..((.....)).....)))).........(((((((((((((((...........--.)))))))))))))))..............................------------- ( -20.30, z-score = -1.31, R) >droSim1.chrX 15584296 105 - 17042790 GGCGAUAGUAAAACUUUAACCGCUUUCAUUAAACUAAAUCGCUUGCUUUAAAAUCUGGC--CAAGCGAGUGAUUUAGCUCAAAUCUUAAGUAAAAAUCUGGAAUAUG------------- ((((..((.....)).....)))).........(((((((((((((((...........--.)))))))))))))))..............................------------- ( -20.30, z-score = -1.31, R) >consensus GGCGAUAGUAAAACUUUAACCGCUUUCAUUAAACUAAAUCGCUUGCUUUAAAAUCUGGC__CAAGCGAGUGAUUUAGCUCAAAUCUUAACUAAAAAUCUCGAAUAUG_____________ ((((..((.....)).....)))).........(((((((((((((((..............)))))))))))))))........................................... (-14.26 = -15.94 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:50 2011