| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,328,033 – 20,328,127 |
| Length | 94 |
| Max. P | 0.584507 |
| Location | 20,328,033 – 20,328,127 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 91.26 |
| Shannon entropy | 0.12237 |
| G+C content | 0.42925 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -26.14 |
| Energy contribution | -25.70 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20328033 94 - 22422827 --------AAAUCGGAGGA-UAAUGGGUGCCCGUGUGGUUGGCUAUUCCUAGCCAGCAGCAUUUUAAAUAAAAUGAUUCUAUUUUCAUCGCCCAAAAUGAUUC --------...........-...((((((...((((.((((((((....)))))))).))))..........((((........))))))))))......... ( -24.90, z-score = -1.41, R) >droSim1.chrX 15583594 103 - 17042790 AAAUGGUGAAAUCGGGGGGCUAAUGGGCGCCCGUGUGGUUGGCUAUUCCUAGCCAGCAGCAUUUUAAAUAAAAUGAUUCUAUUUUCAUCGCCCGAAAUGAUUC ....(((((((...(((.(((....))).)))((((.((((((((....)))))))).))))....................))))))).............. ( -31.90, z-score = -1.45, R) >droSec1.super_8 2523181 103 - 3762037 AAAUGGUGAAAUCGGGGGGUUAAUGGGCGCCCGUGUGGUUGGCUAUUCCUAGCCAGCAGCAUUUUAAAUAAAAUGAUUCUAUUUUCAUCGCCCGAAAUGAUUC ...........(((((((((........))))((((.((((((((....)))))))).))))..........((((........))))..)))))........ ( -29.60, z-score = -0.96, R) >consensus AAAUGGUGAAAUCGGGGGG_UAAUGGGCGCCCGUGUGGUUGGCUAUUCCUAGCCAGCAGCAUUUUAAAUAAAAUGAUUCUAUUUUCAUCGCCCGAAAUGAUUC .......................((((((...((((.((((((((....)))))))).))))..........((((........))))))))))......... (-26.14 = -25.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:49 2011