| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,326,782 – 20,326,836 |
| Length | 54 |
| Max. P | 0.701528 |
| Location | 20,326,782 – 20,326,836 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 89.95 |
| Shannon entropy | 0.16553 |
| G+C content | 0.49630 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -11.24 |
| Energy contribution | -11.28 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20326782 54 + 22422827 GUGGGAGAAAGCGAGCGAAAGUUUUUCCCC-ACUCAAAUGCGAAACAGCAACACU-- (((((.(((...((((....))))))))))-)).....(((......))).....-- ( -17.60, z-score = -3.33, R) >droEre2.scaffold_4690 16932900 53 + 18748788 CUGGGAGAAAG-GGGCGAAAGUUUUUCCCCCACUCAAAUGCGAA-CAGCAACACU-- .((((.(((((-..((....))))))).))))......(((...-..))).....-- ( -14.30, z-score = -1.10, R) >droYak2.chrX 19553165 53 + 21770863 CUGGGAGAAAGCGAGCGAAAGUUUUUCUCC-ACUCAAAGGCGAA-CAGCAACACU-- ...((((((...((((....))))))))))-........((...-..))......-- ( -14.30, z-score = -1.54, R) >droSec1.super_8 2522010 56 + 3762037 GUGGGAGAAAGCGAGCGAAAGUUUUUCCCC-ACUCAACUGCGAAACAGCAACACACU (((((.(((...((((....))))))))))-)).....(((......)))....... ( -17.40, z-score = -2.92, R) >droSim1.chrX 15582488 56 + 17042790 GUGGGAGAAAGCGAGCGAAAGUUUUUCCCC-ACUCAACUGCGAAACAGCAACACACU (((((.(((...((((....))))))))))-)).....(((......)))....... ( -17.40, z-score = -2.92, R) >consensus GUGGGAGAAAGCGAGCGAAAGUUUUUCCCC_ACUCAAAUGCGAAACAGCAACACU__ ..(((((((.....((....))))))))).........(((......)))....... (-11.24 = -11.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:48 2011