Locus 15674

Sequence ID dm3.chrX
Location 20,326,191 – 20,326,301
Length 110
Max. P 0.904945
window21602 window21603

overview

Window 2

Location 20,326,191 – 20,326,301
Length 110
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 47.31
Shannon entropy 0.75487
G+C content 0.29170
Mean single sequence MFE -20.50
Consensus MFE -4.42
Energy contribution -3.87
Covariance contribution -0.55
Combinations/Pair 1.29
Mean z-score -1.96
Structure conservation index 0.22
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.648624
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20326191 110 + 22422827
UUUACUUUAGGUCGCAAUCUAAACUUUCUGAUUCAAUUUGCAAAAACUUUUCAAUUCUAGUGAAUUGAAAAUCAACUUUUUGCAUUCAAUUUGAUUAAUGCAAAAUGCAU--
.....(((((((....))))))).....(((((.((((((((((((.((((((((((....)))))))))).....))))))))...)))).)))))((((.....))))-- ( -22.20, z-score =  -2.58, R)
>droYak2.chrX 19552568 110 + 21770863
UUAAUUAAAAGUUUGAAGUUGAAACUUUCCGCUUAAAAGGGAAAAACGUUUAAUUUCUAGAGAAUUAUAACUCAACUUUUUGCAUCAAAUUCUUUUAAUGCAAAGUGCAU--
.......((((((.(((((((((..(((((.((....)))))))....)))))))))..(((........)))))))))((((((.(((....))).)))))).......-- ( -20.90, z-score =  -1.61, R)
>droGri2.scaffold_14830 1681272 92 + 6267026
-----------------AGUAGAUUUUACGGCGUAAUUGAAAUAAAUCUCAUACCCGUAAUGCUUUUAAGC---AAUUGAUGCUUCAGACAUGAAAAAGGCAACCGAAACAA
-----------------........((((((.(((..(((........))))))))))))(((((((..((---(.....)))((((....))))))))))).......... ( -18.40, z-score =  -1.69, R)
>consensus
UU_A_U__A_GU___AAACUAAAAUUUACGGCUUAAUUGGAAAAAACCUUUAAAUUCUAGUGAAUUAAAACUCAACUUUUUGCAUCAAAUUUGAUUAAUGCAAAAUGCAU__
..............................................................................(((((((............)))))))........ ( -4.42 =  -3.87 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 20,326,191 – 20,326,301
Length 110
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 47.31
Shannon entropy 0.75487
G+C content 0.29170
Mean single sequence MFE -22.33
Consensus MFE -5.94
Energy contribution -5.40
Covariance contribution -0.54
Combinations/Pair 1.47
Mean z-score -2.04
Structure conservation index 0.27
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.18
SVM RNA-class probability 0.904945
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20326191 110 - 22422827
--AUGCAUUUUGCAUUAAUCAAAUUGAAUGCAAAAAGUUGAUUUUCAAUUCACUAGAAUUGAAAAGUUUUUGCAAAUUGAAUCAGAAAGUUUAGAUUGCGACCUAAAGUAAA
--.(((.(((((((((..........)))))))))......((((((((((....))))))))))....((((((.((((((......)))))).))))))......))).. ( -24.60, z-score =  -2.03, R)
>droYak2.chrX 19552568 110 - 21770863
--AUGCACUUUGCAUUAAAAGAAUUUGAUGCAAAAAGUUGAGUUAUAAUUCUCUAGAAAUUAAACGUUUUUCCCUUUUAAGCGGAAAGUUUCAACUUCAAACUUUUAAUUAA
--......(((((((((((....)))))))))))((((((((((.((((((....).))))))))..((((((((....)).))))))..)))))))............... ( -21.80, z-score =  -2.08, R)
>droGri2.scaffold_14830 1681272 92 - 6267026
UUGUUUCGGUUGCCUUUUUCAUGUCUGAAGCAUCAAUU---GCUUAAAAGCAUUACGGGUAUGAGAUUUAUUUCAAUUACGCCGUAAAAUCUACU-----------------
.((((((((.((.......))...)))))))).....(---(((....))))((((((((((((((....)))))..))).))))))........----------------- ( -20.60, z-score =  -2.00, R)
>consensus
__AUGCACUUUGCAUUAAUCAAAUUUGAUGCAAAAAGUUGAGUUUAAAUUCACUAGAAAUAAAAAGUUUUUCCCAAUUAAGCCGAAAAAUUUAAAUU___AC_U__A_U_AA
........((((((((..........))))))))................................((((((.(......).))))))........................ ( -5.94 =  -5.40 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:47 2011