Locus 15673

Sequence ID dm3.chrX
Location 20,325,255 – 20,325,363
Length 108
Max. P 0.941442
window21601

overview

Window 1

Location 20,325,255 – 20,325,363
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 89.24
Shannon entropy 0.14455
G+C content 0.55284
Mean single sequence MFE -33.10
Consensus MFE -27.82
Energy contribution -28.60
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.36
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.47
SVM RNA-class probability 0.941442
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20325255 108 - 22422827
CCACUCAACUACUCGUCCACUUUCCAUUCCCAUUUCCCCCAUUUCAAAUGCAUCAAGUGCACGGCCAGCAAAGGUCAGAAGGUCAGGGGGUCAGAGGGUGUAUGGUGA
.......................((((.(((....(((((.((((...(((((...))))).((((......)))).))))....))))).....)))...))))... ( -29.60, z-score =  -0.28, R)
>droSec1.super_8 2520583 100 - 3762037
CCACUCCACUGCUCGUCUACUUUCCAUUCCCAUUUCCCCCAUUUCAAGUGCAUCAAGUGCACGGCCGGCAAAGGUCAGAAGGUCAGCGGGUCAGGGGGUC--------
..(((((.((((((((..((((((.......................((((((...))))))((((......)))).))))))..))))).)))))))).-------- ( -36.40, z-score =  -3.47, R)
>droSim1.chrX 15581044 100 - 17042790
CCACUCCACCGCUCGUCUACUUUCCAUUCCCAUUUCCCCCAUUUCAAGUGCAUCAAGUGCACGGCCAGCAAAGGUCAGAAGGUCAGCGGGUCAGGGGGUC--------
..(((((...((((((..((((((.......................((((((...))))))((((......)))).))))))..))))))...))))).-------- ( -33.30, z-score =  -3.32, R)
>consensus
CCACUCCACUGCUCGUCUACUUUCCAUUCCCAUUUCCCCCAUUUCAAGUGCAUCAAGUGCACGGCCAGCAAAGGUCAGAAGGUCAGCGGGUCAGGGGGUC________
..(((((...((((((..((((((.......................((((((...))))))((((......)))).))))))..))))))...)))))......... (-27.82 = -28.60 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:46 2011