| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,318,442 – 20,318,536 |
| Length | 94 |
| Max. P | 0.681171 |
| Location | 20,318,442 – 20,318,536 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 88.78 |
| Shannon entropy | 0.15456 |
| G+C content | 0.38410 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -17.62 |
| Energy contribution | -19.07 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20318442 94 - 22422827 AUAUUCAUUUUACAUAUCCGUUACAUGAAGAGUAACCCUAUGAAGUAUAUUCAUUCUUAAUCGGGAUCACUAUCCCGAUCUGA---AUGAUCAGUUG---- ............((((...(((((.......)))))..))))........((((((...((((((((....))))))))..))---)))).......---- ( -22.60, z-score = -2.64, R) >droSim1.chrX_random 5289696 101 - 5698898 AUAUGCCUUUUUCAUAACCGUUACUUGAAGAGUAACCCUAUGAAGUAUAUUCAUUCUUAAUCGGGAUCAGUAUUCCGAUCUGACCAACGGGCAGUUGCACC ...(((((.(((((((...(((((((...)))))))..))))))).........((...((((((((....))))))))..)).....)))))........ ( -24.10, z-score = -1.86, R) >droSec1.super_8 2511454 101 - 3762037 AUAUGCCUUUUUCAUAACCGUUACUUGAAGAGUAACCCUAUGAAGUAUAUUCAUUCUUAAUCGGGAUCAGUAUUCCGAUCUGACCAACGGGCAGUUGCACC ...(((((.(((((((...(((((((...)))))))..))))))).........((...((((((((....))))))))..)).....)))))........ ( -24.10, z-score = -1.86, R) >consensus AUAUGCCUUUUUCAUAACCGUUACUUGAAGAGUAACCCUAUGAAGUAUAUUCAUUCUUAAUCGGGAUCAGUAUUCCGAUCUGACCAACGGGCAGUUGCACC ...(((((.(((((((...((((((.....))))))..))))))).........((...((((((((....))))))))..)).....)))))........ (-17.62 = -19.07 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:45 2011