| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,308,410 – 20,308,463 |
| Length | 53 |
| Max. P | 0.754252 |
| Location | 20,308,410 – 20,308,463 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 97.36 |
| Shannon entropy | 0.04556 |
| G+C content | 0.58113 |
| Mean single sequence MFE | -11.10 |
| Consensus MFE | -10.62 |
| Energy contribution | -10.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20308410 53 + 22422827 UCGAUGUGCCCGAAUGCACUUCGCAUUUUCCUGCCGCCUCCUCGCGCAUUUCC ..((.((((..((((((.....)))))).......((......)))))).)). ( -10.70, z-score = -1.45, R) >droEre2.scaffold_4690 16915926 53 + 18748788 UCGAUGUGCCCGAAUGCACUUCGCAUUUUCCUGCCGCCUCCUCGCGCAUUUCC ..((.((((..((((((.....)))))).......((......)))))).)). ( -10.70, z-score = -1.45, R) >droYak2.chrX 19535767 53 + 21770863 UCGAUGUGCCCGAAUGCACUUCGUAUUUUCCUGCCGCCUCCUCGCGCAAUUCC .(((.((((......)))).)))........(((.((......)))))..... ( -10.90, z-score = -1.97, R) >droSec1.super_8 2502325 53 + 3762037 UCGAUGUGCCCGAAUGCACUUCGCAUUUUCGUGCCGCCUCCUCGCGCAUUUCC .(((.((((......)))).))).......((((.((......)))))).... ( -11.60, z-score = -1.02, R) >droSim1.chrX 15572783 53 + 17042790 UCGAUGUGCCCGAAUGCACUUCGCAUUUUCGUGCCGCCUCCUCGCGCAUUUCC .(((.((((......)))).))).......((((.((......)))))).... ( -11.60, z-score = -1.02, R) >consensus UCGAUGUGCCCGAAUGCACUUCGCAUUUUCCUGCCGCCUCCUCGCGCAUUUCC .(((.((((......)))).)))........(((.((......)))))..... (-10.62 = -10.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:42 2011