| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,120,905 – 12,121,001 |
| Length | 96 |
| Max. P | 0.517099 |
| Location | 12,120,905 – 12,121,001 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.35 |
| Shannon entropy | 0.29915 |
| G+C content | 0.37535 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -18.09 |
| Energy contribution | -18.65 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12120905 96 + 23011544 ---------------GUUUUGUCGUGCAUUCAGACUACAAAGAAUGUAUAAAACGUGAAGUUUUAGUUUGACGGUUUGAGUAACACGAUCAGCGAUCCCACUUUUGCUGAC ---------------......(((((.((((((((((((.....))).((((((.....)))))).......)))))))))..)))))(((((((........))))))). ( -26.20, z-score = -2.10, R) >droEre2.scaffold_4929 13348670 111 - 26641161 ACCAAAGUGAUAUUUAUUUAGUCGUGCAUUAAGAACAUAAAGAAUGAAUAAAACGUGAAGUUUUAGUUUGGCGUAUUGAUAGACACAAUCAGCGAUCUCAACUUUGCUAAC ......(((.((((.((...((((.((........(((.....)))..((((((.....)))))))).))))..)).))))..)))....(((((........)))))... ( -17.10, z-score = 0.53, R) >droSec1.super_16 309317 96 + 1878335 ---------------GUCUUGUCGUGCAUUCAGACUACAAAGAAUGAAUAAAACGUGAAGUUUUAGUUUGAAUGUUUGAGCUACACGAUCAGUGAUCCCACUUUUGCUGAC ---------------.((.(((.((((((((((((((.((...(((.......)))....)).))))))))))))....)).))).))((((..(........)..)))). ( -22.90, z-score = -1.25, R) >droSim1.chr2L 11918557 96 + 22036055 ---------------GUUUUGUCGUGCAUUCAGACUACAAAGAAUAAAUAAAACGUGAAGUUUUAGCUUGACGGUUUGAGCUACACGAUCAGUGAUCCCACUUUUGCUGAC ---------------......(((((..((((((((...(((......((((((.....)))))).)))...))))))))...)))))((((..(........)..)))). ( -24.30, z-score = -1.75, R) >consensus _______________GUUUUGUCGUGCAUUCAGACUACAAAGAAUGAAUAAAACGUGAAGUUUUAGUUUGACGGUUUGAGCUACACGAUCAGCGAUCCCACUUUUGCUGAC .....................(((((..((((((((...(((......((((((.....)))))).)))...))))))))...)))))(((((((........))))))). (-18.09 = -18.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:28 2011