| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,307,226 – 20,307,326 |
| Length | 100 |
| Max. P | 0.934375 |
| Location | 20,307,226 – 20,307,326 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 54.44 |
| Shannon entropy | 0.71119 |
| G+C content | 0.38339 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -7.76 |
| Energy contribution | -8.24 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20307226 100 - 22422827 UUCAUGUACAAUGGAGAAACGGAGGGAAGUUUUG-UUAUUGGUACCAAAUAGAUUUAGACGACUGAGCGAACAGUGUCUGAAUAGUAAAUAU-GAGAAACGA---------------------- (((((((.((((((.(((((........))))).-))))))...........((((((((.((((......)))))))))))).....))))-)))......---------------------- ( -24.40, z-score = -3.04, R) >dp4.chrXL_group1e 8919478 122 - 12523060 UUCAAGUGCAGGUGGGCGAAGAGCCAAAGCCCAGUUUCCUACUGCCUGUUACUGAUAUCUAAUUGAAUAAACUAUGGCCU--UGGUAGAGGUCUAGCCGUGGCCAUGAUACGGACAUGGAUGGA .(((.((((((((((((...........))))(((.....)))))))).))))))((((((..((.......(((((((.--((((((....)).)))).))))))).......)))))))).. ( -37.14, z-score = -0.58, R) >droEre2.scaffold_4690 16914738 100 - 18748788 UUCAUAGGCAAUGGACAAACGAAAGGAAGUUCUG-UUAUAGGUAUUCAAUAGACUUAGACGAUUGAGCGAACAGUGUCUGAAUGGUAAAUGU-GAGAAAAGA---------------------- ((((((.((..((((((..(....)...((((.(-((.(((((.........)))))...))).))))......))))))....))...)))-)))......---------------------- ( -18.00, z-score = -0.42, R) >droSec1.super_8 2501245 75 - 3762037 -------------------------AGAUUUCUG-UUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGU-GAGAAAAGA---------------------- -------------------------...(((((.-.((((..(((((......((((((((.(((......)))))))))))))))))))).-.)))))...---------------------- ( -17.90, z-score = -2.60, R) >droSim1.chrX 15571688 75 - 17042790 -------------------------AGAUUUCUG-UUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGU-GAGAAAAGA---------------------- -------------------------...(((((.-.((((..(((((......((((((((.(((......)))))))))))))))))))).-.)))))...---------------------- ( -17.90, z-score = -2.60, R) >consensus UUCA____CA___G____A_G____AAAGUUCUG_UUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGU_GAGAAAAGA______________________ ..........................................((((......((((((((.((((......))))))))))))))))..................................... ( -7.76 = -8.24 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:42 2011