| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,304,945 – 20,305,011 |
| Length | 66 |
| Max. P | 0.739871 |
| Location | 20,304,945 – 20,305,011 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 97.73 |
| Shannon entropy | 0.03688 |
| G+C content | 0.50758 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -17.16 |
| Energy contribution | -17.23 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20304945 66 + 22422827 CAAUCGCACUGGCGAGCAGAGCGGAAAAGCUGCUGUGUGGCGGAAAAACAACAACUGGCACAAUAA ...((((....))))(((((((......))).))))(((.(((...........))).)))..... ( -18.80, z-score = -1.40, R) >droSim1.chrX 15568316 66 + 17042790 CAAUCGCACUGGCGAGCAGAGCGGAAAAGCUGCUGUGUGGCGGAAAAACAACAACUGGCACAAUAA ...((((....))))(((((((......))).))))(((.(((...........))).)))..... ( -18.80, z-score = -1.40, R) >droSec1.super_8 2498988 66 + 3762037 CAAUCGCACUGGCGAGCAGAGCGGAAAAGCUGCUGUGUGGCGGAAAAACAACAACUGGCACAAUAA ...((((....))))(((((((......))).))))(((.(((...........))).)))..... ( -18.80, z-score = -1.40, R) >droEre2.scaffold_4690 16912498 66 + 18748788 CUAUCGCACUGGUGAGCAGAGCGGAAAAGCUGCUGUAUGGCGGAAAAACAACAACUGGCACAAUAA ...((((....))))(((((((......))).)))).((.(((...........))).))...... ( -13.30, z-score = 0.15, R) >consensus CAAUCGCACUGGCGAGCAGAGCGGAAAAGCUGCUGUGUGGCGGAAAAACAACAACUGGCACAAUAA ...((((....))))(((((((......))).))))(((.(((...........))).)))..... (-17.16 = -17.23 + 0.06)
| Location | 20,304,945 – 20,305,011 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 97.73 |
| Shannon entropy | 0.03688 |
| G+C content | 0.50758 |
| Mean single sequence MFE | -15.08 |
| Consensus MFE | -15.07 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.07 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20304945 66 - 22422827 UUAUUGUGCCAGUUGUUGUUUUUCCGCCACACAGCAGCUUUUCCGCUCUGCUCGCCAGUGCGAUUG ..........(((((((((...........)))))))))....(((.(((.....))).))).... ( -14.90, z-score = -0.79, R) >droSim1.chrX 15568316 66 - 17042790 UUAUUGUGCCAGUUGUUGUUUUUCCGCCACACAGCAGCUUUUCCGCUCUGCUCGCCAGUGCGAUUG ..........(((((((((...........)))))))))....(((.(((.....))).))).... ( -14.90, z-score = -0.79, R) >droSec1.super_8 2498988 66 - 3762037 UUAUUGUGCCAGUUGUUGUUUUUCCGCCACACAGCAGCUUUUCCGCUCUGCUCGCCAGUGCGAUUG ..........(((((((((...........)))))))))....(((.(((.....))).))).... ( -14.90, z-score = -0.79, R) >droEre2.scaffold_4690 16912498 66 - 18748788 UUAUUGUGCCAGUUGUUGUUUUUCCGCCAUACAGCAGCUUUUCCGCUCUGCUCACCAGUGCGAUAG ..........(((((((((...........)))))))))....(((.(((.....))).))).... ( -15.60, z-score = -1.92, R) >consensus UUAUUGUGCCAGUUGUUGUUUUUCCGCCACACAGCAGCUUUUCCGCUCUGCUCGCCAGUGCGAUUG ..........(((((((((...........)))))))))....(((.(((.....))).))).... (-15.07 = -15.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:41 2011