| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,301,034 – 20,301,126 |
| Length | 92 |
| Max. P | 0.881669 |
| Location | 20,301,034 – 20,301,126 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 88.15 |
| Shannon entropy | 0.15970 |
| G+C content | 0.30738 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -15.21 |
| Energy contribution | -14.77 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20301034 92 + 22422827 AAUAUGAUAUAUAUAUUACAAUAAGCAAACAUAAUGCACAAGAAGCUUAAUAAAUUGAGCUUCGUAAAAUGUGUAGGGUGGAGUAAGUUCAA ..(((..(((((((.((((.....(((.......)))....(((((((((....))))))))))))).)))))))..)))............ ( -21.90, z-score = -3.43, R) >droSec1.super_8 2494661 86 + 3762037 AAUAUGGUAUAUAUAU------AAGCAAACAAAAUGCACAAGGAGCUUUAUAAAUUGAGCUUCGUGAAAUGUGUAGUGAGGAGUAAAUUCGA .....(.(((((((..------..(((.......))).((.(((((((........))))))).))..))))))).)..(((.....))).. ( -15.40, z-score = -1.01, R) >droSim1.chrX_random 5281557 86 + 5698898 AAUAUGGUAUAUAUAU------AAGCAAACAAAAUGCACAAGGAGCUUUAUAAAUUGAGCUUCGUGAAAUGUGUAGUGAGGAGUAAACUCGA .....(.(((((((..------..(((.......))).((.(((((((........))))))).))..))))))).)(((.......))).. ( -17.90, z-score = -1.82, R) >consensus AAUAUGGUAUAUAUAU______AAGCAAACAAAAUGCACAAGGAGCUUUAUAAAUUGAGCUUCGUGAAAUGUGUAGUGAGGAGUAAAUUCGA .......(((((((..........(((.......)))....(((((((........))))))).....))))))).....(((....))).. (-15.21 = -14.77 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:39 2011