| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,291,358 – 20,291,461 |
| Length | 103 |
| Max. P | 0.584391 |
| Location | 20,291,358 – 20,291,461 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.30566 |
| G+C content | 0.43723 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -21.92 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20291358 103 + 22422827 CUGUCAGCGUACCACUCCUACCUGUGGUGGAUGUGUUAGGAU----AGUUAUUGUGC--------AAUUAUCAAUC--AUAUGAUAUAUCGCUUACAGAGGAUGUGGAGCAGCUGAU ..((((((((.((((((((..((((((..(((((((((.(((----((((.......--------)))))))....--...)))))))))..)))))))))).)))).)).)))))) ( -36.20, z-score = -2.84, R) >droSim1.chrX 15560574 103 + 17042790 CUGUCAGCAUACCACUCCUACCUGUGGUGGAUGUGUUAGGAU----AGCUAUUGCAC--------AAUGAUCAAUC--AUAUGAUAUAUCGCUUACAGAGGAUGUGGAGCAGCUGAU ..((((((...((((((((..((((((..(((((((((....----.((....))..--------.((((....))--)).)))))))))..)))))))))).))))....)))))) ( -33.70, z-score = -1.75, R) >droSec1.super_8 2484803 103 + 3762037 CUGUCCGCAUACCACUCCUACCUGUGGUGGAUCUGUUAGGAU----AGCUCUUGCGC--------AAUGAUCAAUC--AUAUGUUAUAUCGCUUACAGAGGAUGUGGAGCAGCUGAU ((((((((((.((....(((((...))))).(((((.(((((----(((....))((--------(((((....))--)).)))..)))).)).)))))))))))))).)))..... ( -32.90, z-score = -1.45, R) >droYak2.chrX 19517073 117 + 21770863 UUGCCAGCAUAUCACUCCUAUCUGCGAUGGAUGAGUUGAAAUCAAUAGACAUAGCACGCAGGAGGAAAGGUUUAUUUAACAUGAUCUAUCACUUACAGAGGAUGUGGAGCAGCUGAU ....((((...((((((((..(((((.((.(((.((((....))))...)))..)))))))(((((.(((((..........))))).)).)))....)))).))))....)))).. ( -29.30, z-score = -0.78, R) >consensus CUGUCAGCAUACCACUCCUACCUGUGGUGGAUGUGUUAGGAU____AGCUAUUGCAC________AAUGAUCAAUC__AUAUGAUAUAUCGCUUACAGAGGAUGUGGAGCAGCUGAU ..((((((...((((((((..((((((..(((((((((...........................................)))))))))..)))))))))).))))....)))))) (-21.92 = -22.86 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:38 2011