| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,288,297 – 20,288,375 |
| Length | 78 |
| Max. P | 0.851731 |
| Location | 20,288,297 – 20,288,375 |
|---|---|
| Length | 78 |
| Sequences | 4 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 71.40 |
| Shannon entropy | 0.45573 |
| G+C content | 0.36766 |
| Mean single sequence MFE | -14.38 |
| Consensus MFE | -8.84 |
| Energy contribution | -9.15 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20288297 78 + 22422827 GAAGUGUAUUCCAGAUGCGGAGUGAAUUUACUUCAAAGCAAAAACUUGAAACGGUUCUAAGGCGAAUUUUUCAGUCUU ((((((((((((......))))))....))))))...........((((((.(((((......))))))))))).... ( -15.60, z-score = -0.46, R) >droSim1.chrX 15557553 60 + 17042790 GAAGUGUAUUCCAGAUGCGGAGUGAAUUUACUUCAAAGCAAAAACG------------------AAUUUUUCAGUCUU ((((((((((((......))))))....))))))............------------------.............. ( -10.50, z-score = -0.72, R) >droSec1.super_8 2481813 61 + 3762037 GAAGUGUAUUCCAGAUGCGGAGUGAAUUCACUUCAAAGCAAAAAUG-----------------GAAUUUUUCGGUCUU ((((...((((((..(((((((((....))))))...)))....))-----------------)))).))))...... ( -17.40, z-score = -2.80, R) >droYak2.chrX 19514087 78 + 21770863 GAGGAGUAAUCCAAAAUCGGAGUAAAUUAACCCCAAAGCAAAAAGUUCAAGCGUCUCAAAAAGGAUUUUUCCAGUCUU ..((((.(((((......((.((......)).))...((...........))..........))))).))))...... ( -14.00, z-score = -2.07, R) >consensus GAAGUGUAUUCCAGAUGCGGAGUGAAUUUACUUCAAAGCAAAAACG_________________GAAUUUUUCAGUCUU ((((((((((((......))))))....))))))............................................ ( -8.84 = -9.15 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:37 2011