| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,286,338 – 20,286,393 |
| Length | 55 |
| Max. P | 0.551429 |
| Location | 20,286,338 – 20,286,393 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 78.00 |
| Shannon entropy | 0.39026 |
| G+C content | 0.47771 |
| Mean single sequence MFE | -12.96 |
| Consensus MFE | -8.12 |
| Energy contribution | -9.24 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20286338 55 - 22422827 UUCCAAAAUCGGUUCCAGAGUUAGGGUCGCAUGGAUACCGCGCAUCCAGUUUUCC .........((((((((..((.......)).)))).))))............... ( -8.20, z-score = 0.85, R) >droEre2.scaffold_4690 10354111 55 - 18748788 UUCCAAAUGCGGUUCCAAAGUUGGAGCCCUUUAGAUACUGCGCUCCCAGCUUCCA ..........(((((((....))))))).....((..(((......)))..)).. ( -12.10, z-score = -0.82, R) >droYak2.chrX 19512093 54 - 21770863 UUCCAAAAUCGGUUCCAAAGUUAGAGCCGUAUAG-UUUUGAGUUUCUGGUUUUCU ...((((((((((((........))))))....)-)))))............... ( -10.10, z-score = -1.80, R) >droSec1.super_8 2479827 55 - 3762037 CUCCAAAAUCGGUUCCAGAGUUGGAGCCGAAUGGAUACCACGCUUCCACUUUUCA .((((...((((((((......)))))))).)))).................... ( -17.20, z-score = -2.84, R) >droSim1.chrX_random 5276321 55 - 5698898 CUCCAAAAUCGGUUCCAGAGUUGGAGCCGAAUGGAUACCGCGCUUCCAGUUUUCA .((((...((((((((......)))))))).)))).................... ( -17.20, z-score = -2.25, R) >consensus UUCCAAAAUCGGUUCCAGAGUUGGAGCCGAAUGGAUACCGCGCUUCCAGUUUUCA .((((...((((((((......)))))))).)))).................... ( -8.12 = -9.24 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:36 2011