| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,265,327 – 20,265,447 |
| Length | 120 |
| Max. P | 0.726093 |
| Location | 20,265,327 – 20,265,447 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.53 |
| Shannon entropy | 0.34789 |
| G+C content | 0.45958 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.72 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20265327 120 + 22422827 UGACACAAGCCUGUGACUUAAGAACACUGAAGAGCUAUCGAAAGGCAAAACAUAUCGAUGGCUCGACCCCCUGAUAUCGAUUACUUGAUAGCUCAGUCAGUUUGCACCUCCCCCUGAUAU ...((((....))))......(...(((((.((((((((((..(......)...))))))))))......((((((((((....))))))..)))))))))...)............... ( -29.00, z-score = -2.35, R) >droEre2.scaffold_4690 10334374 117 + 18748788 --UGACGAAACCGUGACUCAAAACUACCGAAAA-CUAUCGCCAGGCAAAACAUAUCGAUGGCGUGCACCCCUGAUAUCGAUUACUUGAUGGCUGUGACAGCUUGCACCUCCCCCUGAUAU --..(((....)))...................-.((((((((...............))))(((((.......((((((....))))))((((...)))).)))))........)))). ( -20.26, z-score = -0.17, R) >droYak2.chrX 19493269 105 + 21770863 ----------CCGUGACUGAAAA--ACUAAAAA-CUAUCGCCAGGCAAAUCAUAUCGAUAGAUUGAGCCUU--AUAUCGAUUACUUGAUGGCUCUGACAGUUUGCACCUCCCCCUGAUAU ----------..(..((((....--........-((((((....(.....)....))))))...(((((..--..(((((....))))))))))...))).)..)............... ( -19.30, z-score = -1.20, R) >droSec1.super_8 2458955 120 + 3762037 CGACACAAACCUAUGACUUACGAACACUGAAGAGCUAUCCAAAAGCCAAACAUAUCGAUGGCUCGCCCCCCUCAUAUCGAUUACUUGAUAGCUCAGUCAGUUUGCACCUCCCCCUGAUAU .....(((((...(((((..((.....))..((((((((....(((((..........)))))........((.....))......))))))))))))))))))................ ( -21.30, z-score = -1.86, R) >droSim1.chrX 15547313 120 + 17042790 UGACACAAACCUGUGACUUACGAACACUGAAGAGCUAUCGAAAUGCCAAACAUAUCGAUGGCUCGCCCCCCUGAUAUCGAUUACUUGAUAGCUCAGUCAGUUUGCACCUCCCCCUGAUAU ...((((....))))......(...(((((.((((((((((.(((.....))).))))))))))......((((((((((....))))))..)))))))))...)............... ( -32.10, z-score = -4.83, R) >consensus _GACACAAACCUGUGACUUAAGAACACUGAAGAGCUAUCGAAAGGCAAAACAUAUCGAUGGCUCGCCCCCCUGAUAUCGAUUACUUGAUAGCUCAGUCAGUUUGCACCUCCCCCUGAUAU .............((((..............(((((((((...............)))))))))..........((((((....)))))).....))))..................... (-13.40 = -13.72 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:34 2011