| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,257,671 – 20,257,765 |
| Length | 94 |
| Max. P | 0.598003 |
| Location | 20,257,671 – 20,257,765 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 61.22 |
| Shannon entropy | 0.72207 |
| G+C content | 0.46346 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -11.72 |
| Energy contribution | -11.22 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.68 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20257671 94 + 22422827 CAGGGGCAGUGGCAACUUGUGUUUUUGGGGGGUCCUUUAAUGGGCCUUUAACUCAAAGCUGCAACACUGGUUGCCUCUUAAAG-AACUUAUAUAC----------- .(((..(((.(((((((.(((((((((((((((((......))))))....)))))).....))))).))))))).))....)-..)))......----------- ( -31.40, z-score = -2.22, R) >droSim1.chrX 15537996 93 + 17042790 CAGGGGCGGCGGCAACUUGUGUUUUUGGGGG-UCCUUUAAUGGGUCUUUAACUCAAUGCUGCAACAGUGGUUGCCUCUUAAAG-AACUCCUUUCC----------- .((((((.((((((..(((.((...(((((.-.((......))..))))))).)))))))))(((....))))))))).....-...........----------- ( -28.50, z-score = -1.02, R) >droSec1.super_8 2449941 93 + 3762037 CAGGGGCAGCGGCAACUUGUGCUUUUGGAGG-UCCUUUAGUGGGCCUUUAACUCAAUGCUGCAACAGUGGUUGCCUCUUAAAG-AACUCCUUUCC----------- .(((((((((.((...((((((..(((((((-(((......))))))))))......)).))))..)).))))))))).....-...........----------- ( -33.20, z-score = -1.64, R) >droEre2.scaffold_4690 10327204 90 + 18748788 CAGGGGCAGCGGCAGCUUGUGUUUU--GGGGGUUCA----------AUUACC---AAACUGCAAUAGUGGUUGCCUCUCCAGC-AGCCUUUUUAAUCCGCACUUCC .(((((((((.((...((((..(((--((..((...----------))..))---)))..))))..)).))))))))).....-...................... ( -24.90, z-score = 0.43, R) >droYak2.chrX 19485003 106 + 21770863 CAGGGGCAGCGGCAGCUUGUAUUUUUUGGGGGUCCAUUAAUGGGCUAUUAACUCAAAGCUGCAGCACUGGUUGCCCCUUAAAAGAGCUUCUUCAGUCCGCUCUUCC .(((((((((.(((((((.......((((.((((((....)))))).))))....))))))).......)))))))))...((((((...........)))))).. ( -38.40, z-score = -1.79, R) >droAna3.scaffold_13417 5460769 96 - 6960332 CAGGGACGAAGGUAAAUCAGUUCUUUAAGGGGGUCUGUAUUU--CUAGGAAUUCUAGGAAUUUAAAUUAAGUUUAAUUGAGAUAAGUAUAUUAAUUUU-------- .((((((............)))))).......((((..((((--((((.....))))))))((((((...))))))...))))...............-------- ( -10.80, z-score = 1.54, R) >consensus CAGGGGCAGCGGCAACUUGUGUUUUUGGGGGGUCCUUUAAUGGGCCAUUAACUCAAAGCUGCAACAGUGGUUGCCUCUUAAAG_AACUUCUUUAC___________ .(((((((((.(....(((((.((((.(((.....................))))))).)))))...).)))))))))............................ (-11.72 = -11.22 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:32 2011