| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,251,408 – 20,251,469 |
| Length | 61 |
| Max. P | 0.939880 |
| Location | 20,251,408 – 20,251,469 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 73.19 |
| Shannon entropy | 0.53067 |
| G+C content | 0.41203 |
| Mean single sequence MFE | -11.70 |
| Consensus MFE | -8.71 |
| Energy contribution | -9.01 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.939880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20251408 61 - 22422827 ---GGACAGGGGAAUACGGAUACGUCAGUGGGCAGGUUAAACAUUUUCGUUUGAUUUGUUAUCA ---........((..(((....))).....((((((((((((......)))))))))))).)). ( -11.90, z-score = -1.36, R) >droSim1.chrX 15525251 61 - 17042790 ---GGACACGGGAAUACGGAUACGUCAGUGGGCAGGUUAAACAUUUUCGUUUGAUUUGUUAUCA ---...(((..((...((....)))).)))((((((((((((......)))))))))))).... ( -14.20, z-score = -2.06, R) >droSec1.super_8 2438431 61 - 3762037 ---GGACACGGGAAUACGGUUACGUCAGUGGGCAGGUUAAACAUUUUCGUUUGAUUUGUUAUCA ---...(((..((...((....)))).)))((((((((((((......)))))))))))).... ( -14.20, z-score = -2.05, R) >droYak2.chrX 19480059 61 - 21770863 ---GGACACGGGAAUAAGGAUACAUCAGUGGGCAGGUUAAACAUUUUCGUUUGAUUUGUUAUCA ---...(((..((...........)).)))((((((((((((......)))))))))))).... ( -12.40, z-score = -2.13, R) >droPer1.super_13 1540422 63 - 2293547 GAGAAAUACACACAUAUCAAUG-GACGACAGGCAGGUUAAACAUUUUCGUUUGAUUUGUUAUCA ......................-...((..((((((((((((......)))))))))))).)). ( -10.80, z-score = -1.65, R) >droVir3.scaffold_13042 4620633 60 + 5191987 ---GGACGUCGCCGUCAGCGCUUAUCGAUAGGCAGAGCAAA-AAUGUCGUUUGAUUUGUUAUCA ---.((((....))))...((..(((((..((((.......-..))))..)))))..))..... ( -11.40, z-score = 0.74, R) >droGri2.scaffold_15203 6101486 53 + 11997470 ----------GGCAUUGGAUUCUGUCGAUGGGCACAGCAAA-AAUUUCGUUUGAUUUGUUAUCA ----------((((........))))(((((.((...((((-.......))))...))))))). ( -7.00, z-score = 0.98, R) >consensus ___GGACACGGGAAUACGGAUACGUCAGUGGGCAGGUUAAACAUUUUCGUUUGAUUUGUUAUCA ..............................((((((((((((......)))))))))))).... ( -8.71 = -9.01 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:31 2011