Locus 15657

Sequence ID dm3.chrX
Location 20,243,042 – 20,243,125
Length 83
Max. P 0.782941
window21582

overview

Window 2

Location 20,243,042 – 20,243,125
Length 83
Sequences 10
Columns 83
Reading direction reverse
Mean pairwise identity 94.51
Shannon entropy 0.11827
G+C content 0.35423
Mean single sequence MFE -18.40
Consensus MFE -17.05
Energy contribution -17.50
Covariance contribution 0.45
Combinations/Pair 1.08
Mean z-score -1.44
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.67
SVM RNA-class probability 0.782941
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20243042 83 - 22422827
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGCGGAGUAACAACAGUUGCG
...(((((.(((((....))))))))))(((((((......)))...)))).((((....))))....(((((....))))). ( -18.80, z-score =  -1.08, R)
>droSim1.chrX 15518166 83 - 17042790
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGCGGAGUAACAACAGUUGCG
...(((((.(((((....))))))))))(((((((......)))...)))).((((....))))....(((((....))))). ( -18.80, z-score =  -1.08, R)
>droSec1.super_8 2430019 83 - 3762037
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGCGGAGUAACAACAGUUGCG
...(((((.(((((....))))))))))(((((((......)))...)))).((((....))))....(((((....))))). ( -18.80, z-score =  -1.08, R)
>droYak2.chrX 19474506 83 - 21770863
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGAGGAGUAACAACAGUUGCG
..((((((.(((((....)))))))))))((((((..((((((...((....))))))))..))))))(((((....))))). ( -19.60, z-score =  -1.70, R)
>droEre2.scaffold_4690 10315559 83 - 18748788
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGAGGAGUAACAACAGUUGCG
..((((((.(((((....)))))))))))((((((..((((((...((....))))))))..))))))(((((....))))). ( -19.60, z-score =  -1.70, R)
>droAna3.scaffold_13417 1518545 83 - 6960332
UGUUUUGUUGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACACGAGUAGCAACAACAGUUGCA
..((((((.(((((....)))))))))))..((((..((((((...((....))))))))..))))..(((((....))))). ( -20.60, z-score =  -1.73, R)
>dp4.chrXL_group1e 7035093 81 - 12523060
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUCGAACACAUGUUAACAUGAAGAGUAACAACAGUUA--
...(((((.(((((....))))))))))(((((((......)))...)))).((((....)))).................-- ( -15.10, z-score =  -1.08, R)
>droPer1.super_13 774434 82 + 2293547
UGUUUUGUAGC-AAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUCGAACACAUGUUAACAUGAAGAGUAACAACAGUUACA
...(((((.((-((.....)))))))))(((((((......)))...)))).((((....))))....(((((....))))). ( -18.60, z-score =  -2.28, R)
>droWil1.scaffold_181096 9284113 83 - 12416693
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGAAGAGUAACAACAGUUGCA
...(((((.(((((....))))))))))(((((((......)))...)))).((((....))))....(((((....))))). ( -19.50, z-score =  -1.87, R)
>droGri2.scaffold_15203 5907247 83 - 11997470
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCUCCUUAACGAUUUGAACACAUGUUAACAUGAAGAGUAACAACUACAGCA
...(((((.(((((....))))))))))(((((((..((((....))))...((((....)))).)))).))).......... ( -14.60, z-score =  -0.80, R)
>consensus
UGUUUUGUAGCAAAUAAUUUUGCACAAAGUUCUCGCCUUAACGAUUUGAACACAUGUUAACAUGAGGAGUAACAACAGUUGCG
...(((((.(((((....))))))))))(((((((......)))...)))).((((....))))....(((((....))))). (-17.05 = -17.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:30 2011