Locus 15651

Sequence ID dm3.chrX
Location 20,212,352 – 20,212,419
Length 67
Max. P 0.826599
window21573

overview

Window 3

Location 20,212,352 – 20,212,419
Length 67
Sequences 3
Columns 74
Reading direction reverse
Mean pairwise identity 74.88
Shannon entropy 0.33505
G+C content 0.58380
Mean single sequence MFE -19.47
Consensus MFE -15.46
Energy contribution -15.13
Covariance contribution -0.33
Combinations/Pair 1.23
Mean z-score -1.45
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.82
SVM RNA-class probability 0.826599
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20212352 67 - 22422827
GCAGCAAAGGAGGGGAUAUUCCAAUGGCUGCGGAGCCAGAGG-------ACCAAGUAGCUGGAGAGCUGGAGAG
(((((...((((......))))....)))))....((((...-------.(((......)))....)))).... ( -21.00, z-score =  -1.61, R)
>droYak2.chrX 19442192 74 - 21770863
GGAGCAAAGGAGGGGAUACUCCAAUGGCUGCGGAGCCAGAGGACCAAGUACCAAGUAGCUGGAGAGCUGGAGAG
((.((...((((......))))..(((((....))))).........)).))...(((((....)))))..... ( -21.20, z-score =  -0.75, R)
>droSim1.chrX 15507555 51 - 17042790
GCAGCAAAGGAGGGGAUAUUCCAAUGGCUGCGGAGCUGGAG---------------AGCUGGAGAG--------
(((((...((((......))))....)))))..((((....---------------))))......-------- ( -16.20, z-score =  -1.99, R)
>consensus
GCAGCAAAGGAGGGGAUAUUCCAAUGGCUGCGGAGCCAGAGG_______ACCAAGUAGCUGGAGAGCUGGAGAG
.((((...((((......))))..(((((....)))))...................))))............. (-15.46 = -15.13 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:23 2011