| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,119,765 – 12,119,858 |
| Length | 93 |
| Max. P | 0.586145 |
| Location | 12,119,765 – 12,119,858 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.45 |
| Shannon entropy | 0.48316 |
| G+C content | 0.50183 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -14.68 |
| Energy contribution | -14.83 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12119765 93 - 23011544 AUCCCCAUCCAA--AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCAGCUCUG----------------- ............--......((((((...(((((((((.....)))))...((....)).)))).......((((((.....)))))).))))))----------------- ( -27.00, z-score = -1.84, R) >droSim1.chr2L 11917451 93 - 22036055 AGCCCCAACCAA--AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCAGCUCUG----------------- ............--......((((((...(((((((((.....)))))...((....)).)))).......((((((.....)))))).))))))----------------- ( -27.00, z-score = -1.50, R) >droSec1.super_16 308209 93 - 1878335 AGCCCCAACCAA--AGUUAUUAGAGCCGCGAGGGCCCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCAGCUCUG----------------- ............--......((((((...(((((((((.....)))))...((....)).)))).......((((((.....)))))).))))))----------------- ( -30.00, z-score = -2.61, R) >droYak2.chr2L 8537968 93 - 22324452 CACCCCAUCCAA--AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCGUCAUCAGCGAUUGCACAGAUCGCAGCUCUG----------------- ............--......((((((.(((((((((((.....)))))...((....)).)))))).....((((((.....)))))).))))))----------------- ( -29.80, z-score = -2.54, R) >droEre2.scaffold_4929 13347660 93 + 26641161 CACCCCAUCCAA--AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCGUCAUCGGCGAUUGCACAGAUCGCAGCUCCG----------------- ............--........((((.(((((((((((.....)))))...((....)).)))))).....((((((.....)))))).))))..----------------- ( -27.80, z-score = -1.35, R) >droAna3.scaffold_12916 2919585 93 + 16180835 --CUCCCUCCCAGCAGCCAUUGGGCCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCGGUUUUU----------------- --............(((((((((((((....)))))))))....((((((.....)))).)).........((((((.....))))))))))...----------------- ( -32.90, z-score = -1.97, R) >droPer1.super_1 2712145 92 + 10282868 -------GUACAA-AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCAGAGUUCUUCUC------------ -------......-.......((((((..(((((((((.....)))))...((....)).)))).......((((((.....)))))).).)))))....------------ ( -24.10, z-score = -1.15, R) >dp4.chr4_group3 5614912 92 + 11692001 -------GUACAA-AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCAGAGUUCUUCUC------------ -------......-.......((((((..(((((((((.....)))))...((....)).)))).......((((((.....)))))).).)))))....------------ ( -24.10, z-score = -1.15, R) >droWil1.scaffold_180708 9779576 86 - 12563649 -----------A--AAUUAUUUAAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGAGAUUGCAGUGAUC-GGAUCGCAGACUC------------ -----------.--...........((....))(((((.....)))))(((.....((((.(((.......)))..))))(((((.-..))))).)))..------------ ( -21.20, z-score = -0.43, R) >droVir3.scaffold_12963 8321637 104 - 20206255 ------GUUCCA--AGUUAUUAAAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCAGUGAUCGGCAUCGAAUACUUUUUGCAGCUCUU ------(((.((--((.((((...((((.(((((((((.....)))))...((....)).))))(((((..((....)).)))))))))....))))...)))).))).... ( -24.50, z-score = 0.21, R) >droMoj3.scaffold_6500 929086 103 - 32352404 ------GUUCGA--AGUUAUUAAAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCUCCGAUCGCCAUCGAAUAC-UUUUCCAGCUCCU ------((((((--...............(((((((((.....)))))...((....)).)))).......(((((((...)))))))..))))))..-............. ( -25.20, z-score = -0.52, R) >droGri2.scaffold_15252 11532073 102 + 17193109 ------GUCUCA--AGCUAUUAAAGCCUCCAGGGUUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCAGUGAUC-GCAUCGCAGAC-UUUUGCAGCUCUU ------......--((((...((((.((.(.((((...(((((((.....)))))))..))))........((((((.....))))-))...).)).)-)))...))))... ( -21.80, z-score = 0.58, R) >consensus ______AUCCAA__AGUUAUUAGAGCCGCGAGGGCUCAAUAAAUGGGCGUCGUUUAUGCACCUCAUCAUCAGCGAUUGCACAGAUCGCAGCUCUG_________________ ...........................((((..(((((.....)))))((((((.(((........))).))))))........))))........................ (-14.68 = -14.83 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:26 2011