| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,209,377 – 20,209,487 |
| Length | 110 |
| Max. P | 0.724381 |
| Location | 20,209,377 – 20,209,487 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.93 |
| Shannon entropy | 0.36068 |
| G+C content | 0.51572 |
| Mean single sequence MFE | -34.20 |
| Consensus MFE | -21.04 |
| Energy contribution | -21.97 |
| Covariance contribution | 0.93 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20209377 110 - 22422827 GGGGAGUAGCCUCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCACAUGUCAGUCAUCCAGAGAGGCAGUCAGCCGGAGUCGGCCGACUCAUCCUGCUC .((((...((((((((..((((..(((((((((((...))))))))))))))).)))(((.....))).....)))))((((.((((....)))).))))..)))).... ( -39.10, z-score = -2.18, R) >droSim1.chrX 15504721 110 - 17042790 GGGGAGUAGCCUCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCACAUGUCAGUCAUCCAGAGAGGCAGUCACCCGGAGUCGGCCGACUCAUCCUGAUG (((((.(.((((((((..((((..(((((((((((...))))))))))))))).)))(((.....))).....)))))).)).))).(((((....)))))......... ( -38.00, z-score = -1.93, R) >droSec1.super_8 2394583 110 - 3762037 GGGGAGUAGCCUCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCACAUGUCAGUCAUCCAGAGAGGCAGUCACCCGGAGUCGGCCGACUCAUCCUGAUG (((((.(.((((((((..((((..(((((((((((...))))))))))))))).)))(((.....))).....)))))).)).))).(((((....)))))......... ( -38.00, z-score = -1.93, R) >droYak2.chrX 19439197 110 - 21770863 GGGGAGUGGCCUCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCACAUGUCAGUCAUCCAGAGAGGCAGUCACUCGGAGUCGGCCGACUCAUCCUGCUG ((((((((((((((((..((((..(((((((((((...))))))))))))))).)))(((.....))).....)))))...))))).(((((....)))))..))).... ( -38.80, z-score = -1.49, R) >droEre2.scaffold_4690 10287541 94 - 18748788 GGGGAGUAGCCUCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCACAUGUCAGUCAUCCAG--AGUGGGUCGACCCAUCCCGCUC-------------- ..(((...((..(((((..(((..(((((((((((...)))))))))))..))).)))))...))..))).(--((((((.........)))))))-------------- ( -31.10, z-score = -1.86, R) >droMoj3.scaffold_6308 517103 83 - 3356042 --AGAG-AGUCGCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCAUAUGCCAGUCAUUCAGUCAGUCACUCAGUC------------------------ --...(-(.(.((((((..(((..(((((((((((...)))))))))))..))).)))))).).))....................------------------------ ( -20.20, z-score = -1.10, R) >consensus GGGGAGUAGCCUCGUGUUUGUGCAUCAUUUGAUUAACGUAAUCGAAUGACACGCCACAUGUCAGUCAUCCAGAGAGGCAGUCACCCGGAGUCGGCCGACUCAUCCUG_UG ..(((.......(((((..(((..(((((((((((...)))))))))))..))).))))).......))).................(((((....)))))......... (-21.04 = -21.97 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:21 2011