| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,204,998 – 20,205,107 |
| Length | 109 |
| Max. P | 0.506850 |
| Location | 20,204,998 – 20,205,107 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.73 |
| Shannon entropy | 0.56228 |
| G+C content | 0.51743 |
| Mean single sequence MFE | -35.26 |
| Consensus MFE | -16.20 |
| Energy contribution | -18.15 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20204998 109 - 22422827 GUUG--GCUGUCUCGCAACGCACCAGACCAAGUUCCC-UGGGCUAAUUGAACCCACUGAGUCA-------CCGCAACUCGGUG-AGGGUAUGCAGUCUUUGACUUGGUCGUGGAGUUUCG ((((--.(......)))))((.((((((((((((...-.(((((.......((((((((((..-------.....))))))))-.))......)))))..))))))))).))).)).... ( -37.92, z-score = -1.10, R) >dp4.chrXL_group1e 5458952 95 + 12523060 ----AUUUUAGUUUUCAUUCCUUCAGAACAGACUAU--UAGGCUAUUUGAAA-----GAAGC--------CUGCCUUUGGUU--AGGGUAUACACUCUUCUGCUUUGUGGCACACA---- ----....((((((...(((.....))).)))))).--.(((((..((....-----)))))--------))(((...(((.--(((((....)))))...)))....))).....---- ( -19.30, z-score = 0.07, R) >droAna3.scaffold_13417 5404985 100 + 6960332 --UGUAUGUGUAUUUUCUGGCAACAAG-CAAGCUCC--UCGGCUAAUUGAAGUCACUGAGCUACGAACUCCGACAGCGGGGCGUAGAGUAUGCAGUCUUUGGCUU--------------- --....((((((((((.((....))..-..(((((.--..((((......))))...)))))(((..(((((....))))))))))))))))))...........--------------- ( -25.00, z-score = 1.08, R) >droEre2.scaffold_4690 10283650 109 - 18748788 -UUG--GCUGUCUCGCAUCGCUCCGGGCCAAGUUCCCUUUGGCUAAUUGAAGCCACUGAGUCA-------CCGCAGCUCGGUG-AGGGUAUGCAGUCUUUGACUUGGUCGUGGAGUUUCG -...--((......))...((((((((((((((((((((.((((......))))(((((((..-------.....))))))))-))))............))))))))).)))))).... ( -39.60, z-score = -1.29, R) >droYak2.chrX 19434677 111 - 21770863 GUUGGUGUUGUCUCGCAUCGCUCCAGACCAAGUUCCC-UGGGCUAAUUGAAGCCACUGAGUCA-------CCACAACUCGGUG-AGGGUAUGCAGUCUUUGACUUGGUCGUGGAGUUUCG ...(((((......)))))((((((((((((((((((-(.((((......))))(((((((..-------.....))))))).-))))............))))))))).)))))).... ( -42.90, z-score = -2.58, R) >droSec1.super_8 2390230 109 - 3762037 GUUG--GGUGUCUCGCAUCGCUCCAGACCAAGUUCCC-UGGGCUAAUUGAACCCACUGAGUCA-------CCGCAACUCGGUG-AGGGUUUGCAGUCUUUGACUUGGUCGUGGUGUUUCG ....--((((.....))))((.((((((((((((...-.(((((...((((((((((((((..-------.....))))))).-.))))))).)))))..))))))))).))).)).... ( -40.70, z-score = -1.97, R) >droSim1.chrX 15499766 109 - 17042790 GUUG--GCUGUCUCGCAUCGCUCCAGACCAAGUUCCC-UGGGCUAAUUGAACCCACUGAGUCA-------CCGCAACUCGGUG-AGGGUAUGCAGUCUUUGACUUGGUCGUGGAGUUUCG ....--((......))...(((((((((((((((...-.(((((.......((((((((((..-------.....))))))))-.))......)))))..))))))))).)))))).... ( -41.42, z-score = -2.25, R) >consensus GUUG__GCUGUCUCGCAUCGCUCCAGACCAAGUUCCC_UGGGCUAAUUGAACCCACUGAGUCA_______CCGCAACUCGGUG_AGGGUAUGCAGUCUUUGACUUGGUCGUGGAGUUUCG ......................((((((((((((.....(((((.........((((((((..............))))))))..........)))))..))))))))).)))....... (-16.20 = -18.15 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:20 2011