| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,194,459 – 20,194,574 |
| Length | 115 |
| Max. P | 0.975786 |
| Location | 20,194,459 – 20,194,574 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 84.99 |
| Shannon entropy | 0.26250 |
| G+C content | 0.48782 |
| Mean single sequence MFE | -38.68 |
| Consensus MFE | -31.92 |
| Energy contribution | -31.68 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20194459 115 + 22422827 UGUUCGUUAAUGAUGACACUUCUUAUUGUCAGCUUGGUGGGUGGACCUAGUGAACUCCGUGGGCUGAGUGGACUGAGUGGACCCACUUGGUGAUUUGUCAGUCAUAAGCGGACGA .(((((((.(((((((((.........((((.(..(((((((..((.((((..((((.(....).))))..)))).))..))))))).).)))).))))).)))).))))))).. ( -42.80, z-score = -2.53, R) >droEre2.scaffold_4690 10273632 109 + 18748788 UGUUCGUUAAUGAUGACACUUCUUAUUGUCAGCUCGAU----GGACCCAGUGACUGAGAUGAACUCAGCGGGCU-AGUGGACCUGCUCGGUGAUUUGUCAGUCAUAAGCG-ACGA ...(((((.(((((((((..(((((((.((((.(((.(----(....)).))))))))))))(((.(((((((.-....).)))))).)))))..))))).)))).))))-)... ( -35.30, z-score = -1.33, R) >droYak2.chrX 19423807 103 + 21770863 UGUUCGUUAAUGAUGACACUUCUUAUUGUCAGCUCGUU----GGAGCCAGUGAACUCC--------AGUGGACUGAGUGGACUCACUUGGUGAUUUGUCAGUCAUAAGCGGACGC .(((((((.(((((((((..((...........(((((----((((........))))--------)))))((..((((....))))..))))..))))).)))).))))))).. ( -36.10, z-score = -2.19, R) >droSec1.super_8 2379900 108 + 3762037 UGUUCGUUAAUGAUGACACUUCUUAUUGUCAGCUUGGUGGGCGGACCUAGUGAACUC-------UGAGUGGACUGAGUGGACCCACUUGGUGAUUUGUCAGUCAUAAGCGGACGA .(((((((.(((((((((((.((((..((..(((.(((......))).)))..))..-------)))).))((..((((....))))..))....))))).)))).))))))).. ( -39.10, z-score = -2.58, R) >droSim1.chrX 15475430 106 + 17042790 UGUUCGUUAAUGAUGACACUUCUUAUUGUCAGCUUGGUGGGCGGACCUAGUGAACUCC---------GUGGACCGAGUGGACCCACUUGGUGAUUUGUCAGUCAUAAGCGGACGA .(((((((.(((((((((..((.....(((.(((((((..(((((..........)))---------))..))))))).)))((....)).))..))))).)))).))))))).. ( -40.10, z-score = -2.75, R) >consensus UGUUCGUUAAUGAUGACACUUCUUAUUGUCAGCUUGGUGGG_GGACCUAGUGAACUCC______U_AGUGGACUGAGUGGACCCACUUGGUGAUUUGUCAGUCAUAAGCGGACGA .(((((((.(((((((((..((.....((..(((.(((......))).)))..))................((((((((....))))))))))..))))).)))).))))))).. (-31.92 = -31.68 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:19 2011