| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,193,810 – 20,193,906 |
| Length | 96 |
| Max. P | 0.970709 |
| Location | 20,193,810 – 20,193,906 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 95.65 |
| Shannon entropy | 0.09338 |
| G+C content | 0.33260 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -19.60 |
| Energy contribution | -19.58 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20193810 96 - 22422827 GUUUGGGGUCAAAGCCAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))))).)))))))).))))))) ( -23.50, z-score = -2.84, R) >droEre2.scaffold_4690 10273086 96 - 18748788 GUUUGGGGUCAAAGCCAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUCAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))).)))))))))).))))))) ( -25.70, z-score = -3.21, R) >droYak2.chrX 19423132 96 - 21770863 GUUUGGGGUCAAAGCCAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))))).)))))))).))))))) ( -23.50, z-score = -2.84, R) >droSec1.super_8 2379253 96 - 3762037 GUUUGGGGUCAAAGCCAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))))).)))))))).))))))) ( -23.50, z-score = -2.84, R) >droSim1.chrX 15474787 96 - 17042790 GUUUGGGGUCAAAGCCAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))))).)))))))).))))))) ( -23.50, z-score = -2.84, R) >dp4.chrXL_group1e 5447366 96 + 12523060 GUUUGGGGUCAAAGCUAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))))).)))))))).))))))) ( -21.20, z-score = -2.51, R) >droPer1.super_13 1478110 96 - 2293547 GUUUGGAGUCAAAGCUAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ((((((........))))))((((((((((((((((.....))))))).....((((((((((((((....)))))))).)))))))).))))))) ( -21.10, z-score = -2.68, R) >droAna3.scaffold_13417 5391760 92 + 6960332 CUUUGCGGUGGAAGCCAAACGGUUGUUGC-GAAUUAAUUAAUGAUUCACUCGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGCUCU--- ....(((((....)))...((((..((.(-((((.(((((((.((((....)))).))))))))))))....))..))))......)).....--- ( -20.90, z-score = -1.86, R) >consensus GUUUGGGGUCAAAGCCAAAUGGUUGAUGCUGAAUUAAUUAAUGAUUCACUUGAAUGAUUGAUUAUUUGACUAAAUGAUUGAAUUAUGCGAUCGACC ......((((((((((....))))..........((((((((.((((....)))).)))))))).))))))....(((((.......))))).... (-19.60 = -19.58 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:18 2011