| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,187,916 – 20,187,985 |
| Length | 69 |
| Max. P | 0.878504 |
| Location | 20,187,916 – 20,187,985 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 67.60 |
| Shannon entropy | 0.58010 |
| G+C content | 0.57543 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -14.72 |
| Energy contribution | -14.60 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.878504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20187916 69 + 22422827 -------------AGCUUGAGGUUUCA-GUGCCUUCUGUGGUCCGCUCCACAUUUCGAGGCUUCACUGCGGCCAGGCCGCAGG -------------....((((((((((-(......))((((......)))).....)))))))))(((((((...))))))). ( -27.70, z-score = -1.70, R) >droPer1.super_13 1472653 79 + 2293547 CGUGUUUGAUACCACUUUAAAAUGUGU-GUUCUGUGUUUG-UUCAUCCCAC-UUUGGAGGACUUACUGUA-CCCAGCUGCAGU .(..(..(((((.((........))))-)))..)..)..(-(((.(((...-...)))))))..((((((-......)))))) ( -13.20, z-score = 1.01, R) >droAna3.scaffold_13417 5384214 67 - 6960332 -------------AGUUUGCAGUUUCGUAUUUAUUGAGUGAGUUGUAUCCCCCGUGGAGGGCUU-CUCUG--CAGGCCAAAGG -------------.(((((((..((((.......)))).(((..((.(((.....)))..))..-)))))--)))))...... ( -14.50, z-score = 0.41, R) >droEre2.scaffold_4690 10267763 67 + 18748788 -------------AGCUCG-GGUAUCA-GUGCCUUAUGUG-UGCGUUCCGCCUUUCGAGGCUUCACUGUGGCCCGGCCGCAGG -------------.((.((-(((..((-(((((((....(-.(((...))))....)))))...))))..)))))))...... ( -23.60, z-score = -0.44, R) >droYak2.chrX 19417175 69 + 21770863 -------------AGCUUGAGGUUUCA-GUGCCUGCUGCGGUCCGGUCCGCCUUUCGAGGCUUCACUGUGGCCAGGCCGCAGG -------------......((((....-..)))).((((((((.(((((((((....))))......).)))).)))))))). ( -28.40, z-score = -0.67, R) >droSec1.super_8 2373624 69 + 3762037 -------------AGCUUGAGGUUUCG-GUGCCUUCUGUGGUCCGUUCCACAUUUCGAGGCUUCACUGCGGCCUGGCCGCAGG -------------....((((((((((-(.......(((((......)))))..)))))))))))(((((((...))))))). ( -30.30, z-score = -2.64, R) >droSim1.chrX 15469070 69 + 17042790 -------------AGCUUGAGGUUUCG-GUGCCUUCUGUGGUCCGUUCCACAUUUCGAGGCUUCACUGCGGCCUGGCCGCAGG -------------....((((((((((-(.......(((((......)))))..)))))))))))(((((((...))))))). ( -30.30, z-score = -2.64, R) >consensus _____________AGCUUGAGGUUUCA_GUGCCUUCUGUGGUCCGUUCCACAUUUCGAGGCUUCACUGUGGCCAGGCCGCAGG ..............................(((((..((((......)))).....)))))....(((((((...))))))). (-14.72 = -14.60 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:15 2011