Locus 15642

Sequence ID	dm3.chrX
Location	20,185,667 – 20,185,767
Length	100
Max. P	0.986115

overview

Window 3

Location	20,185,667 – 20,185,767
Length	100
Sequences	4
Columns	108
Reading direction	forward
Mean pairwise identity	62.30
Shannon entropy	0.59659
G+C content	0.32862
Mean single sequence MFE	-18.80
Consensus MFE	-8.19
Energy contribution	-9.75
Covariance contribution	1.56
Combinations/Pair	1.38
Mean z-score	-2.21
Structure conservation index	0.44
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.23
SVM RNA-class probability	0.986115
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20185667 100 + 22422827
-------CUUUGUAUCUCAAAGCAUAUUCUACAUUGAUCUUUUACUCAGAUCGCACUUAUAAUUUAUGUUAUUAGUCUAUACAACGACUUUCGGAAUAUAUUUCCAA-
-------(((((.....))))).(((((((.....(((((.......)))))(.(((.(((((....))))).))))...............)))))))........- ( -14.00, z-score =  -1.75, R)
>droSec1.super_8 2371448 100 + 3762037
--------CUUGUAUCUCAAUGCAUGUUCUACAUUGAUCUUUUACUCAGAUCGCACUUAUAAUUUUUGUUAUUAGUCUAUACUCCUACUUCCGGAAUAUGUUCUGAAU
--------........(((..(((((((((.....(((((.......)))))(.(((.(((((....))))).))))...............)))))))))..))).. ( -18.90, z-score =  -2.93, R)
>droSim1.chrX 15465984 100 + 17042790
--------CUUGUAUCUCAAUGCAUGUUCUACAUUAAUCUGUUACUCAGAUCGCACUUAUAACUUUUGUUAUUAGUCUAUACACCGACUUCCGGAAUAUGUUCUGAAU
--------........(((..(((((((((......(((((.....))))).(.(((.(((((....))))).))))...............)))))))))..))).. ( -20.50, z-score =  -2.87, R)
>droWil1.scaffold_181096 9234689 107 + 12416693
CAUUAAACUUCAAAAACCCAGAAGUGUAGUAGGUUAGCCCUAUAAA-AUCUCGAAUGGAUAGCGAAGGCGAUUAAGUCUUAUGUAUCAAUACGGGCAACUUUAACAAA
.((((.(((((.........))))).))))(((((.((((......-((((.....)))).((((((((......))))).)))........)))))))))....... ( -21.80, z-score =  -1.30, R)
>consensus
________CUUGUAUCUCAAUGCAUGUUCUACAUUAAUCUUUUACUCAGAUCGCACUUAUAACUUAUGUUAUUAGUCUAUACACCGACUUCCGGAAUAUGUUCUCAAU
....................((((((((((....((((((.......)))))).(((.(((((....))))).)))................))))))))))...... ( -8.19 =  -9.75 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:14 2011