| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,177,441 – 20,177,533 |
| Length | 92 |
| Max. P | 0.538929 |
| Location | 20,177,441 – 20,177,533 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 62.16 |
| Shannon entropy | 0.62116 |
| G+C content | 0.53903 |
| Mean single sequence MFE | -33.54 |
| Consensus MFE | -13.18 |
| Energy contribution | -12.58 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20177441 92 + 22422827 --GACUGGCAGGCGGCGAUGUGGCCGAAGGUG-AGCCGUUCUUCGUGGGACUCCUCUUGGAAUUUGUAACCCUGUAAGC--CUGGCCAGAAAUUAGC---------------- --..((((((((((((......)))...(((.-.((.(((((....)))))(((....)))....)).)))......))--)).)))))........---------------- ( -30.80, z-score = -0.47, R) >droSim1.chrX_random 5215461 92 + 5698898 --GACUGGCAGGCGGCGAUGGGGCAGAAGGUGCAGGCGUUCUUCGAGGGACUCCUCUUGGAGUUUCUAACCCACCU-GC--CUGGCCAGAAAUUAGC---------------- --..(((((((((((.(.(((((.((((.((....)).)))).).((..(((((....)))))..))..)))))))-))--)).)))))........---------------- ( -43.70, z-score = -3.08, R) >droSec1.super_8 2362090 92 + 3762037 --GACUGGCAGGCGGCGAUGGGGCAGAAGGUGCAGGCGUUCUUCGAGAGACUCCUCUUGGAGUUUUUGACCCUCCU-GC--CUGGCCAGAAAUUAGC---------------- --..(((((((((((.((.((((.((((.((....)).)))).).(((((((((....)))))))))..)))))))-))--)).)))))........---------------- ( -42.10, z-score = -2.64, R) >droEre2.scaffold_4690 10258420 90 + 18748788 --GACUGGCAGGCGGCGAUGUGGAUGAAGGUGGAGGCGUUGUUGAUGGGACUCCUCU-GGAACUUGC-ACCCUCCU-GC--CUGGCCAGGAAUUAGC---------------- --..(((((((((((.((.(.((.((.(((((((((.(((.(....).))).)))))-...)))).)-))))))))-))--)).)))))........---------------- ( -35.40, z-score = -1.51, R) >dp4.chrXL_group1e 5430781 113 - 12523060 UCCACUGGCAGCAAUUAGCUGAAUUGAAUUGCUAAACGAAGUUCUCGUAAUAUCGAUUGGUUUCUUCUUUUCCAAAGGCAACAUUCUAUUAAAAGGCUUGAAUAAGUAUUUAC .((.....((((.....))))(((.((((((((..((((.....))))........((((...........)))).))))..)))).)))....))................. ( -15.70, z-score = 1.34, R) >consensus __GACUGGCAGGCGGCGAUGGGGCAGAAGGUGCAGGCGUUCUUCGAGGGACUCCUCUUGGAAUUUGUAACCCUCCU_GC__CUGGCCAGAAAUUAGC________________ ....(((((.....((....(((..(((((.........))))).......(((....)))........))).....)).....)))))........................ (-13.18 = -12.58 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:14 2011