| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,150,644 – 20,150,710 |
| Length | 66 |
| Max. P | 0.773741 |
| Location | 20,150,644 – 20,150,710 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 86.14 |
| Shannon entropy | 0.22030 |
| G+C content | 0.41213 |
| Mean single sequence MFE | -15.02 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.05 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20150644 66 + 22422827 AAGGCUCCGUAUUUAU-AUUGGUACACUUCAGAAAACAAGCAUUCAUGAGUU-CGGUACUCGGAGCUG ..(((((((((((...-...)))))......................((((.-....)))))))))). ( -17.60, z-score = -2.47, R) >droYak2.chrX 19389497 66 + 21770863 AAGGCUCUGUAUUUAU-AUUGGUACACUUAAAGAAACCACGAGCCAUGAGUC-CGGUACUCGGAGUUA ..(((((((((((...-...))))))......(....)..))))).(((.((-((.....)))).))) ( -17.00, z-score = -1.47, R) >droSec1.super_8 2344804 68 + 3762037 AAGGCUCCGUAUUUUUUAUUGGUACACUUCAAAAAACAAGCAGUCACGAGUUUCGUUACUCGGAACUG ........(((((.......)))))...............((((..(((((......)))))..)))) ( -13.70, z-score = -1.46, R) >droSim1.chrX 15456877 67 + 17042790 AAGGCUCCGUAUUUAU-AUUGGUACACUUCAAAAAACAAGCAGUCAUGAGUUUCGGUACUCGGAACUG ........(((((...-...)))))...............((((..(((((......)))))..)))) ( -11.80, z-score = -0.60, R) >consensus AAGGCUCCGUAUUUAU_AUUGGUACACUUCAAAAAACAAGCAGUCAUGAGUU_CGGUACUCGGAACUG ..(((((((((((.......)))))......................((((......)))))))))). (-12.93 = -13.05 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:12 2011