| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,149,112 – 20,149,206 |
| Length | 94 |
| Max. P | 0.805345 |
| Location | 20,149,112 – 20,149,206 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 65.78 |
| Shannon entropy | 0.51309 |
| G+C content | 0.45113 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -9.61 |
| Energy contribution | -9.55 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20149112 94 - 22422827 ------------------AUAACUGCACCUAGUGUUAGCUACCCCAACUACGUG---------CUACGUGUUCUGUCCAACAACGAUUUUCGUAUGCUAAUAAUCCCACGCAGAAUGCGUC ------------------......((((.((((.............)))).)))---------).(((((((((((......(((.....)))((....))........))))))))))). ( -20.22, z-score = -1.71, R) >droSim1.chrX 15455375 103 - 17042790 ------------------AUAACUGCACCUAGUGUUGGCUAUGAAAAUUGAACGCAGCCCCAACUACGUGUUCUGUCCAACAACGAUUUUCGUAUGCUAAUAAUCCCACGCAGAGUGCGUC ------------------......((((((.((((((((((((((((((((((((............))))))((.....))..)))))))))).)))))......)))..)).))))... ( -26.40, z-score = -2.17, R) >droYak2.chrX 19388006 106 - 21770863 --------------AUUAGCUAUGAAAAUUGAACUCAGUUCACAGGACU-CAUCCUGCCCCAACUACGUGCUCUGUGCAACUCCGAUUUUCGUAUGCUAAUAAUCGCACGUAGAAUGCGUC --------------(((((((((((((((((.....((((..(((((..-..)))))....))))...(((.....)))....))))))))))).))))))...((((.......)))).. ( -28.70, z-score = -3.16, R) >droEre2.scaffold_4690 10241653 114 - 18748788 AUAAGUCCACUAGUGUUGGCUGUGAAAAUUGAACUUGGCUCGCAGGACU-CA------CCCAACUACGUGUUCUGUCCAAUUACGAUUUUCGUAUGCUAAUAAUCCCACGCAGAAUGCGUC .............((((((((((((((((((...((((...(((((((.-(.------.........).)))))))))))...))))))))))).))))))).....((((.....)))). ( -29.60, z-score = -1.77, R) >consensus __________________ACAACGAAAACUAAACUUAGCUAACAGAACU_CAUG____CCCAACUACGUGUUCUGUCCAACAACGAUUUUCGUAUGCUAAUAAUCCCACGCAGAAUGCGUC .................................................................(((((((((((.......((.....))(((....))).......))))))))))). ( -9.61 = -9.55 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:07 2011