| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,134,900 – 20,135,016 |
| Length | 116 |
| Max. P | 0.683262 |
| Location | 20,134,900 – 20,135,016 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.70 |
| Shannon entropy | 0.30227 |
| G+C content | 0.65343 |
| Mean single sequence MFE | -46.30 |
| Consensus MFE | -32.24 |
| Energy contribution | -33.05 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20134900 116 - 22422827 ----CCCAUCCAGAGGACGCCUUUCGCUCGGCGGCAGCUGUGUCCUUCUGCCCGUCCUCUGCCGGCGGCGAGGGGUCCUUGCUGGUGACGAAUUUCCUUGCUAAUGGCGAGUGGUGCUGG ----......(((((((((((........)))(((((..(....)..))))).))))))))((((((((((((...)))))))(....).....(((((((.....))))).)).))))) ( -49.00, z-score = -0.80, R) >droSim1.chrX_random 5224978 97 - 5698898 ----CCCAUCCAGAGGUCGCCUUUCGCUCGGCGGCAGCUGCGUCCUUCUGCCCGUCCUCUGCCGGCGGCGA-GUGUCCUUGCUGGUGACAAGUCU----GCGAAGG-------------- ----.((.((((((.((((((..((((.((.((((((..(((..(....)..)))...)))))).))))))-((......)).))))))...)))----).)).))-------------- ( -40.60, z-score = -1.06, R) >droSec1.super_8 2328284 112 - 3762037 CCCAUCCAUCCAGAGGUCGCCUUUCGCUCGGCGGCAGCUGUGUCCUUCUGCCCGUCCUCUGCCGGCGGCGA-GUGUCCUUGCUGGUGACGAAUGUCCUUGCUGAUGGUGCUGG------- .(((.(((((..((((.(((...((((.((.((((((..(((..(....)..)).)..)))))).))))))-))).))))((.((.(((....))))).)).)))))...)))------- ( -42.20, z-score = -0.72, R) >droYak2.chrX 19373531 107 - 21770863 ----CCCAUCACGAGGACGCC-UUCGCUCGACGGCAGCUGUGUCCUUCUGCCCGUCCGCUGCCGGCGGCGA-GUGUCCUUGCUGUUGGCGAAUGUCCUUGCUGAUGGUGCUGG------- ----.((((((((((((((..-(((((..((((((((..(....)..))).))))).)).(((((((((((-(....))))))))))))))))))))))).))))))......------- ( -53.40, z-score = -4.17, R) >consensus ____CCCAUCCAGAGGACGCCUUUCGCUCGGCGGCAGCUGUGUCCUUCUGCCCGUCCUCUGCCGGCGGCGA_GUGUCCUUGCUGGUGACGAAUGUCCUUGCUAAUGGUGCUGG_______ ......((((..((((((((...((((.((.((((((..(((..(....)..)).)..)))))).)))))).))))))))...))))................................. (-32.24 = -33.05 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:05 2011