| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,133,682 – 20,133,797 |
| Length | 115 |
| Max. P | 0.664902 |
| Location | 20,133,682 – 20,133,797 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.79 |
| Shannon entropy | 0.48702 |
| G+C content | 0.44665 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -14.27 |
| Energy contribution | -17.07 |
| Covariance contribution | 2.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20133682 115 + 22422827 CGUUAUCCUAUACUGGUCGCAAUGAAUAUCUUUUUUUUUUUUACCAGUGUGUGCAGCGAAGGAA-ACAAUCCGAUCGCAUUUUGCGCUUUGUACGCGCUAUUUGAUGCGGUCCAGU ((((..(.(((((((((......(((.......)))......))))))))).).))))..(((.-....)))(((((((((..((((.......)))).....))))))))).... ( -32.50, z-score = -1.96, R) >droSim1.chrX_random 5223632 106 + 5698898 CGUUAUGCAAUACUGGUCGGAGUCACUGU--------UUUUUGCCAGUGUG--CAGCAGAGCAAUGCAAUCCGAUCGCAUUUUGCGCUUUGGACGCGCUAUUUGAUGCGGUCCAGU ......((((...(((((((((((((((.--------.......))))).)--).(((......)))..))))))))....))))...((((((.(((........))))))))). ( -37.20, z-score = -1.51, R) >droSec1.super_8 2327277 105 + 3762037 CGUUAUGCAAUACUGGUCGGAGUCACUAU--------UUUUUGCCAGUGUG--CAGCAGAGGAA-ACAAUCCGAUCGCAUUUUGCGCUUUGUACGCGCUAUUUGAUGCGGUCCAGU .((..((((.(((((((..(((.......--------)))..)))))))))--))))...(((.-....)))(((((((((..((((.......)))).....))))))))).... ( -36.20, z-score = -2.37, R) >droYak2.chrX 19372238 95 + 21770863 CUCUAUUCUAUACUA----CAUUCUACAUUU----UUUUUUGGCCAGUGUA-----------AA--CAAUCCGAUCGCAUUUUGAGCUUUGGACGCGCUAUUUGAUGCGGUCCGGU .............((----((((...((...----.....))...))))))-----------..--....(((((((((((...(((.........)))....)))))))).))). ( -20.40, z-score = -1.08, R) >droEre2.scaffold_4690 10226036 88 + 18748788 CUUUAUCCUAUACUG----UAUAUACUAUA------AUUUCUGCCAGUGUG--CAGCGCAGGAA-ACAAUCCGAUCGCAUUUUGAGCUUUGGAUGCGCUUG--------------- ........(((((((----...........------........)))))))--.(((((.(...-.).((((((..((.......)).)))))))))))..--------------- ( -20.21, z-score = -0.82, R) >consensus CGUUAUCCUAUACUGGUCGCAGUCACUAU________UUUUUGCCAGUGUG__CAGCAGAGGAA_ACAAUCCGAUCGCAUUUUGCGCUUUGGACGCGCUAUUUGAUGCGGUCCAGU .........(((((((...........................)))))))......................(((((((((..((((.......)))).....))))))))).... (-14.27 = -17.07 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:04 2011