| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,131,574 – 20,131,666 |
| Length | 92 |
| Max. P | 0.777931 |
| Location | 20,131,574 – 20,131,666 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Shannon entropy | 0.29750 |
| G+C content | 0.42534 |
| Mean single sequence MFE | -17.56 |
| Consensus MFE | -15.09 |
| Energy contribution | -14.94 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20131574 92 - 22422827 UCACUAUAUUGCAUACACAAGCUGCAAUAAAAAAUUCAGCCCACGUCCCGAGCACUUAUUGAUACGUGAGCAUAGAUGACACACAAUCUCGC---------------------- (((((((((((((.........))))))).........((.(((((..(((.......)))..))))).)).))).))).............---------------------- ( -17.80, z-score = -1.87, R) >droPer1.super_13 1423605 114 - 2293547 CCACUAUUGUGCAUAUACAAACUGUAAUAAAAAAUUCAGUCCACGUCUCAAGCACUUAUUGAUACGUGAGCAUAGAUGACAUACACAUGCUCGUACUCACACUCCUACUCCCAC ......((((((........((((.(((.....))))))).(((((.((((.......)))).))))).))))))(((((((....))).)))).................... ( -19.50, z-score = -1.43, R) >dp4.chrXL_group1e 5392838 114 + 12523060 CCACUAUUGUGCAUAUACAAACUGUAAUAAAAAAUUCAGUCCACGUCUCAAGCACUUAUUGAUACGUGAGCAUAGAUGACAUACACAUGCUCGUACUCACCCUCCUACUCCCAC ......((((((........((((.(((.....))))))).(((((.((((.......)))).))))).))))))(((((((....))).)))).................... ( -19.50, z-score = -1.74, R) >droAna3.scaffold_13417 5311822 92 + 6960332 UCACUAUUGUGCAUACACAAACUCUAAUAAAAAAUUCAGUCCACGUCUGGAGCACUUAUUGAUACGUGAGCAUAGAUGACACACACUCCUGC---------------------- (((((((((((....)))))..................(..(((((.(.((.......)).).)))))..).))).))).............---------------------- ( -13.50, z-score = 0.39, R) >droEre2.scaffold_4690 10223739 92 - 18748788 UCACUAUUGUGCAUACAGAAGCUGCAAUAAAAAAUUCAGCCCACGUCCCGAGCACUUAUUGAUACGUGAGCAUAGAUGACACACAAUCUCGC---------------------- ......((((((........((((.(((.....))))))).(((((..(((.......)))..))))).)))))).................---------------------- ( -17.20, z-score = -0.76, R) >droYak2.chrX 19370138 92 - 21770863 UCACUAUUGUGCAUACACAAGCUGCAAUAAAAAAUUCAGCCCACGUCCCGAGCACUUAUUGAUACGUGAGCAUAGAUGACACACAAUCUCGC---------------------- ......((((((........((((.(((.....))))))).(((((..(((.......)))..))))).)))))).................---------------------- ( -17.20, z-score = -0.97, R) >droSec1.super_8 2324836 92 - 3762037 UCACUAUUGUGCAUACACAAGCUGCAAUAAAAAAUUCAGCCCACGUCCCGAGCACUUAUUGAUACGUGAGCAUAGAAGACACACAAUCCCGC---------------------- ...((.((((((........((((.(((.....))))))).(((((..(((.......)))..))))).)))))).))..............---------------------- ( -18.60, z-score = -2.22, R) >droSim1.chrX_random 5221106 92 - 5698898 UCACUAUUGUGCAUACACAAGCUGCAAUAAAAAAUUCAGCCCACGUCCCGAGCACUUAUUGAUACGUGAGCAUAGAUGACACACAAUCCCGC---------------------- ......((((((........((((.(((.....))))))).(((((..(((.......)))..))))).)))))).................---------------------- ( -17.20, z-score = -1.37, R) >consensus UCACUAUUGUGCAUACACAAGCUGCAAUAAAAAAUUCAGCCCACGUCCCGAGCACUUAUUGAUACGUGAGCAUAGAUGACACACAAUCCCGC______________________ ......((((((........((((.(((.....))))))).(((((..(((.......)))..))))).))))))....................................... (-15.09 = -14.94 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:03 2011