| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,128,420 – 20,128,498 |
| Length | 78 |
| Max. P | 0.941370 |
| Location | 20,128,420 – 20,128,498 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 66.99 |
| Shannon entropy | 0.64226 |
| G+C content | 0.52397 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -10.89 |
| Energy contribution | -11.75 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20128420 78 - 22422827 GCCCUCGACCAAAAGCUGAUUGAUGCGGCACGUUGGCCAGCUAAUCAGUGCUGCCGCUUAAUUAGCUAUAGAAUAGCU .............((((((((((.((((((((((((........)))))).))))))))))))))))........... ( -24.80, z-score = -1.63, R) >droEre2.scaffold_4690 10222026 71 - 18748788 GCCCCCGGCCAGAAGCUGAUUGCUACGGCAGGUAGGC-AGGUAAUCAGUGCUGACGCGCAGUUAGCUGGAGA------ ........(((...((((((((((...((......))-.))))))))))((((((.....)))))))))...------ ( -24.60, z-score = -0.05, R) >droYak2.chrX 19367351 78 - 21770863 GCCCUCGGCCAAAAGCUGAUUGCUACGGCCAGUUGGCUUACUAAUCAGUGCUGCCGCCUAAUUAGCUAGAGAAUAGCU .....((((.....((((((((.((.((((....)))))).))))))))...)))).......(((((.....))))) ( -24.30, z-score = -0.86, R) >droSec1.super_8 2322587 66 - 3762037 GCCCUCGACCAGAAGCUGAUUGCUGCAGCACG------------UCAGUGCUGCCGCUUAAUUAGCUAGAGAAUAGCU ...(((.......((((((((((.(((((((.------------...))))))).))..)))))))).)))....... ( -24.50, z-score = -2.66, R) >droSim1.chrX_random 5203429 66 - 5698898 GCCCUCGACCAGAAGCUGAUUGCUGCAGCACG------------UCAGUGCUGCCGCUUAAUUAGCUAGAGAAUAGCU ...(((.......((((((((((.(((((((.------------...))))))).))..)))))))).)))....... ( -24.50, z-score = -2.66, R) >dp4.chrXL_group1e 5388818 71 + 12523060 GCACACUGCCUAAAGGUGGCUGAUGAGGCACUCAAA--GGACUGCCAAUCUUGUCG-----AUAUUUAGGGUAUUUCU ........((((((..((((.(((..((((.((...--.)).)))).)))..))))-----...))))))........ ( -19.70, z-score = -1.12, R) >consensus GCCCUCGACCAAAAGCUGAUUGCUGCGGCACGU_GG___G_UAAUCAGUGCUGCCGCUUAAUUAGCUAGAGAAUAGCU .............((((((((((.((((((..................)))))).))..))))))))........... (-10.89 = -11.75 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:02 2011