Locus 15629

Sequence ID	dm3.chrX
Location	20,104,862 – 20,104,972
Length	110
Max. P	0.884695

overview

Window 6

Location	20,104,862 – 20,104,972
Length	110
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	68.18
Shannon entropy	0.43891
G+C content	0.34657
Mean single sequence MFE	-26.40
Consensus MFE	-16.44
Energy contribution	-15.46
Covariance contribution	-0.98
Combinations/Pair	1.41
Mean z-score	-1.64
Structure conservation index	0.62
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.07
SVM RNA-class probability	0.884695
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20104862 110 + 22422827
----ACCUAUAU-UUUUAA-AAGUUCGGAUUGAAGUGUUCAGAUAGUGUGCUGAAU--AUUGCAUA--GUAUACAAAAUAGUGACGAAUGGUUUUUGAAAUCGUGUCUGAGCUUUUCCAG
----........-....((-((((((((((((((((((((((........))))))--))).(((.--((.(((......)))))..)))..........))).)))))))))))).... ( -23.90, z-score =  -1.29, R)
>droEre2.scaffold_4690 10199304 120 + 18748788
AUACAGAUACAUAUUUUAAAAGGUUCGGAUUGAUGUGUUCAGAUAGUGUGCUGAAUAUUGCAUAAAAAGUGAGCAUAAUAGUUGCGUAUGGUUCUAGAAAUUGUAUCUGAGCUGAGUAAG
...((((((((..(((((((..((.(((((((.((((((((.....(((((........))))).....)))))))).))))).)).))..)).)))))..))))))))........... ( -30.00, z-score =  -2.13, R)
>droSec1.super_8 2300204 100 + 3762037
----AACGAUAU-UUUUAAUAAGUUCGGAUCGAAGCGUUUAGAGAGUGUGCUGAAU--UGCAUAAAA-GUAAACAAAAUAGUGACGCGU------------CGUGUCUGAGCUUUUCUAG
----........-.......(((((((((((((.(((((.......(((((.....--.)))))...-....((......))))))).)------------)).))))))))))...... ( -25.30, z-score =  -1.49, R)
>consensus
____AACUAUAU_UUUUAA_AAGUUCGGAUUGAAGUGUUCAGAUAGUGUGCUGAAU__UGCAUAAAA_GUAAACAAAAUAGUGACGAAUGGUU_U_GAAAUCGUGUCUGAGCUUUUCAAG
.....................(((((((((......(((((.....(((((........))))).....))))).........(((...............))))))))))))....... (-16.44 = -15.46 +  -0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:03:00 2011