| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,102,159 – 20,102,300 |
| Length | 141 |
| Max. P | 0.869621 |
| Location | 20,102,159 – 20,102,300 |
|---|---|
| Length | 141 |
| Sequences | 5 |
| Columns | 154 |
| Reading direction | reverse |
| Mean pairwise identity | 78.55 |
| Shannon entropy | 0.36172 |
| G+C content | 0.43389 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -22.08 |
| Energy contribution | -21.36 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20102159 141 - 22422827 ------------UCCAAACACCUAACCAAACGCACACUCUCGCACACUCACCUGUCCA-UGCCCUAACACUGUAUAUAUCGAUAACCAACUGCAGUCUGAUAUAUGCACCUGUGUGAGUGCCUUUAACAGUGUUUAACAGUUUAUUAACAGCCA ------------...((((((......(((.((((....((((((((......))...-...........(((((((((((((...........))).))))))))))...)))))))))).)))....))))))....(((....)))..... ( -25.80, z-score = -1.09, R) >droAna3.scaffold_13417 5276594 122 + 6960332 -------------------------CCACAUGCCUUCACUCACCUGCUCAUUAAUUCACUGUACAUAUGCUGUGUAUAUCGAUAA-CAAUUACCGUCUGAUAUAUGCACCUGUGUGAGUGCGU------GUGUUUAACAGUUUAUUAACAGCCA -------------------------.(((((((.(((((.((..(((.........(((.(((....))).)))(((((((((..-........))).)))))).)))..)).))))).))))------))).......(((....)))..... ( -28.50, z-score = -1.25, R) >droEre2.scaffold_4690 10196555 143 - 18748788 CCGAAAACUGAAACGAAUCACCACACCAAGCGCACACGCUCGCAUACUCACCUGUCCA-UGCCCUAACACUGUAUAUAUCGAUAACCACCUACAGUGUGAUAUAUGCACCUGUGUGAGUGCC----------UUUAACAGUUUAUUAACAGCCA ....((((((........((((((((..((((....)))).((((((......))..)-)))........(((((((((((...((........)).)))))))))))...))))).)))..----------.....))))))........... ( -30.56, z-score = -2.09, R) >droYak2.chrX 19341143 137 - 21770863 -------------CCAAACAC---ACCAAGCGCACACACUCGCAUACUCACCUGUCCA-UGCUCUAACACUGUAUAUAUCGAUAACCAACUACAGUCUGAUAUAUGCACCUGUGCGAGUGCCUUUAACAGUGUUUAACAGUUUAUUAACAGCCA -------------..((((((---......((((((.....((((((......))..)-)))........(((((((((((((...........))).))))))))))..)))))).((.......)).))))))....(((....)))..... ( -28.30, z-score = -1.64, R) >droSec1.super_8 2297411 140 - 3762037 -------------CCAAACACCACACCAAGCGCACACACUCGCACACUCACCUGUCCA-UGCCCUAACACUGUAUAUAUCGAUAACCAACUGCAGUCUGAUAUAUGCACCUGUGUGAGUGCCUUUAACAGUGUUUAACAGUUUAUUAACAGCCA -------------..((((((........((((.(((((..(((.((......))...-)))........(((((((((((((...........))).))))))))))...))))).))))........))))))....(((....)))..... ( -29.69, z-score = -1.44, R) >consensus _____________CCAAACACC__ACCAAGCGCACACACUCGCAUACUCACCUGUCCA_UGCCCUAACACUGUAUAUAUCGAUAACCAACUACAGUCUGAUAUAUGCACCUGUGUGAGUGCCUUUAACAGUGUUUAACAGUUUAUUAACAGCCA ...............................((...((((((((((.......((.....))........(((((((((((((...........))).))))))))))..))))))))))...................(((....))).)).. (-22.08 = -21.36 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:59 2011