| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,054,947 – 20,055,043 |
| Length | 96 |
| Max. P | 0.614273 |
| Location | 20,054,947 – 20,055,043 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 66.43 |
| Shannon entropy | 0.65733 |
| G+C content | 0.56522 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -9.78 |
| Energy contribution | -9.78 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20054947 96 - 22422827 AGGCCUUCCUCACUCGCCAACAUGGAUAUAUCCUGUGUGGCCAAUAGGACCCGCCACCGCUUGUCCAACCACAUGGCCAGCCGCAAGGAUUAGGAG .((((..........(((((((.(((....)))))).)))).....((((..((....))..))))........))))..((....))........ ( -29.80, z-score = -0.97, R) >droSec1.super_8 2282053 96 - 3762037 GCGCGUCCCACGUACGCCAACAUGGAUACAUCCUGUGUGGCCAAUAGGACCCGCAAUCGCUUGGCCGGCCACAUGGCCACCCGCAGGGAGUAGGAG .....(((.(((((..((.....)).))).(((((((.((((((..(....)((....))))))))((((....))))...))))))).)).))). ( -35.50, z-score = -0.53, R) >droYak2.chrX 10400467 96 + 21770863 UUGCACCCCACAUACACCAACAUGGAUGUAUCCUGUGUGGCCAACAGGACCCGCAACCGCUUGCCCACCCACUUGGCCACCCGCAAGGAUUAGGAG ............((((((.....)).))))(((((.((((((((..((....((((....))))....))..))))))))((....))..))))). ( -31.10, z-score = -2.31, R) >droEre2.scaffold_4690 10182392 96 - 18748788 AUGCAUCCAACAUACACCAACAUGGAUGUAUCCUGUGUGGCCAAUAGGACCCGCAACCGCUUGCCCACGCACAUGGCCACUCGCAAGGUUUAGGAG .((((((((.............))))))))(((((.(((((((...((........))((........))...)))))))((....))..))))). ( -30.32, z-score = -1.48, R) >droWil1.scaffold_180777 4163488 86 + 4753960 ------AAGCCUUCCACUCCACUGGACAUCUCAUGUGUGGCUAAUCGGACGCGGCAUCGUUUGCCGGUCUAUUUGGCCAAUCAUAAGUAAUA---- ------......((((......))))...((.(((..(((((((..((((.(((((.....)))))))))..)))))))..))).)).....---- ( -29.40, z-score = -3.13, R) >droAna3.scaffold_13417 5262458 79 + 6960332 -------UGGCGUCUCCGAACAUGGACAUAUCCUGUAUAGCCAACAGGACUCGCCGGCGCUUGCCCUUCUACAAGACUGGCCGCAA---------- -------.(((((((........))))...((((((.......))))))...))).(((...(((..((.....))..))))))..---------- ( -23.60, z-score = -0.95, R) >consensus __GC_UCCCACAUACACCAACAUGGAUAUAUCCUGUGUGGCCAAUAGGACCCGCAACCGCUUGCCCACCCACAUGGCCACCCGCAAGGAUUAGGAG .......................(((....)))((((((((((...((....((........))....))...))))))..))))........... ( -9.78 = -9.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:57 2011