| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,054,694 – 20,054,783 |
| Length | 89 |
| Max. P | 0.989187 |
| Location | 20,054,694 – 20,054,783 |
|---|---|
| Length | 89 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Shannon entropy | 0.20869 |
| G+C content | 0.40816 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -19.41 |
| Energy contribution | -18.97 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.989187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20054694 89 - 22422827 GGUUGUGGACCAAAUGCGUGCGUUUGGUUCGCACCCGUUAUUCUC-----------UAUUUUCCGCCUUUUGUACAUAUAAAAUUCCAUUAAAAUCCUGU ((.(((((((((((((....))))))))))))).)).........-----------...........((((((....))))))................. ( -21.90, z-score = -3.07, R) >droSim1.chrX 15432789 100 - 17042790 GGCUGUGGACCAAAUUCGUGCGUUUGGUUCGCACCUGCUAUUCUCAUUGUAGCUUUGAUUUUCAGCCUUUUGUACAUACAGAAUCCCAUUAAAUUCCUGU (((((((((((((((......)))))))))))....(((((.......)))))..........))))((((((....))))))................. ( -26.30, z-score = -2.76, R) >droSec1.super_8 2281178 100 - 3762037 GGCUGUGGACCAAAUUCGUGCGUUUGGUUCGCACCUACUAUUCUCAUUGUAGCUUUAAUUUUCAGCCUUUUGUACAUACAGAAUCCCAUUAAAUUCCUGU (((((((((((((((......)))))))))))..((((..........))))...........))))((((((....))))))................. ( -23.80, z-score = -2.79, R) >consensus GGCUGUGGACCAAAUUCGUGCGUUUGGUUCGCACCUGCUAUUCUCAUUGUAGCUUUAAUUUUCAGCCUUUUGUACAUACAGAAUCCCAUUAAAUUCCUGU ((.((((((((((((......))))))))))))))................................((((((....))))))................. (-19.41 = -18.97 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:56 2011