| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,052,721 – 20,052,841 |
| Length | 120 |
| Max. P | 0.720842 |
| Location | 20,052,721 – 20,052,841 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 65.76 |
| Shannon entropy | 0.63136 |
| G+C content | 0.44260 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -12.87 |
| Energy contribution | -14.17 |
| Covariance contribution | 1.30 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20052721 120 + 22422827 CAUUACUCAUACGCCAUGUUGGCGUUAGCAUUUUAAAUGUAACAUACAUUAAUGGUAAUCAGAUGCAGUAAUGCGAAAGGGAGGUGGAGACA--ACUGCGUUUUUG-----GCCAG-GAAACGGGGAC------- (((((((((((((((.....)))))((.((((...((((((...)))))))))).)).....))).)))))))((((((.(((.((....))--.)).).))))))-----.((.(-....).))...------- ( -32.60, z-score = -2.11, R) >droPer1.super_13 1379628 131 + 2293547 UGAAGUUCCUGCUUUACGUU----UCAACCAUUUGAAUGAAACCCAUAUACCCUUUUGCACGAUCACACCAUUGUUAAAACAGCUGAUCACCCUCUAGCGGGGUGGAGGAUGCUGGCAAACCGAGGGCAAGGGAA ((((((....)))))).(((----(((..(....)..))))))((.....((((((((((((((......))))).....((((...(((((((.....))))))).....))))))))...)))))....)).. ( -34.90, z-score = -0.31, R) >droSim1.chrX 15430686 129 + 17042790 CAUUACUCAUACGCCAUGUUGGCGUGAGCAUUUCAAAUGUAACAUACAUAAAUGGUAGCUAGAUGCAGCAAUGCGAAAGGGAAGUGGAGACACAACUGCAUUUUUG-----GCCAG-GAAUCGGGAAUCGGGGAC .....(((.((((((.....)))))).(.(((((..(((((...)))))...((((....((((((((...(.(....).)..(((....)))..))))))))...-----)))))-))))).......)))... ( -37.90, z-score = -2.61, R) >droSec1.super_8 2279054 122 + 3762037 CAUUACUCAUACGCCAUGUUGGCGUGAGCAUUUCAAAUGUAACAUACAUAAAUGGUAGCUAGAUUCAGUAAUGCGAAAGGAAAGUGGAGACACAACUGCAUUUUUG-----GCCAG-GAAUCGGGGAC------- .....(((.((((((.....)))))).(.(((((..(((((...)))))...((((....((((.((((..(.(....).)..(((....))).)))).))))...-----)))))-))))))))...------- ( -33.10, z-score = -2.17, R) >droYak2.chrX 10398079 101 - 21770863 CAUUACUCAUACGCCAUGUUGGCGUGAACAUUUCAAAUGUAACAUA----AAUGACAAUUAGA---------------GAGGAGAGGAGAAA--ACUGCACUUUUG-----GCCAG-GAAUCGGGGAC------- .....(((.((((((.....)))))).((((.....))))......----...........))---------------).((..(((((...--......))))).-----.))..-.....(....)------- ( -17.50, z-score = 0.34, R) >droEre2.scaffold_4690 10180016 116 + 18748788 CAUUACUCAUACGCCAUGUUGGCGUGAACAUUUCAAAUGUAACAUA----AAUGGUAAUUAGAUGCAAUAAUGCCAAACGGCGGUGGAGAGA--ACUGCACUUUUG-----GCCAG-GAAUCGGGGAC------- .....(((.((((((.....))))))...(((((...((((...((----(.......)))..)))).....((((((.((((((.......--))))).).))))-----))..)-)))).)))...------- ( -28.50, z-score = -0.76, R) >consensus CAUUACUCAUACGCCAUGUUGGCGUGAACAUUUCAAAUGUAACAUACAUAAAUGGUAACUAGAUGCAGUAAUGCGAAAGGGAAGUGGAGACA__ACUGCAUUUUUG_____GCCAG_GAAUCGGGGAC_______ .....(((.((((((.....))))))..........................((((........(((....))).....(((((((.((......)).)))))))......)))).......))).......... (-12.87 = -14.17 + 1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:55 2011