| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,040,257 – 20,040,354 |
| Length | 97 |
| Max. P | 0.756665 |
| Location | 20,040,257 – 20,040,354 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 76.92 |
| Shannon entropy | 0.30035 |
| G+C content | 0.48610 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -14.15 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20040257 97 - 22422827 AUACCGUCUUGGCCUACAAAUCUCUGGGCCAACACUUAGCUUACCAUAUUUUAGCUGCCUAUAUUUUGUCUCCUUUCCUUUCCAACAGCCAGUCAAG .....((.((((((((........)))))))).)).(((((...........)))))........................................ ( -15.70, z-score = -1.24, R) >droSec1.super_8 2267002 79 - 3762037 AUGCCGUCUUGGUCCACAAAUCUCUGGGCCAAC-----------------UUGGCUGCCCAUGUUUU-UCUUCCUUUGUUUCCAACAGGCAGGCAAG ........((((((((........))))))))(-----------------(((.(((((..((((..-...............))))))))).)))) ( -23.93, z-score = -1.83, R) >droSim1.chrX 15418513 79 - 17042790 AUGCCGUCUUGGUCCACAAAUCUCUGGGCCAAC-----------------UUGGCUGCCCAUGUUUU-UCCUCCUUUGUUUCCAACAGCCAGCCAAG ........((((((((........))))))))(-----------------(((((((....((((..-...............))))..)))))))) ( -22.53, z-score = -2.55, R) >consensus AUGCCGUCUUGGUCCACAAAUCUCUGGGCCAAC_________________UUGGCUGCCCAUGUUUU_UCUUCCUUUGUUUCCAACAGCCAGCCAAG ........((((((((........))))))))..................(((((((....((((..................))))..))))))). (-14.15 = -14.60 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:52 2011