| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,014,508 – 20,014,620 |
| Length | 112 |
| Max. P | 0.582690 |
| Location | 20,014,508 – 20,014,620 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 70.09 |
| Shannon entropy | 0.56645 |
| G+C content | 0.40613 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -14.58 |
| Energy contribution | -16.65 |
| Covariance contribution | 2.07 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20014508 112 - 22422827 UCAUAUUGUUGUGGUUGG----CUUGUGCUUAGAGGCUCAAGUUCUUCAAUGGAAUC---AAAUUCCCAUAUGAAAUUUGGUGUUACUCAAAAGAGGUUGAUUCCCUCAGCGGGAAUUC .....(((((((((..((----((((.(((....))).))))))..)))..((((((---((....(((.........))).....(((....))).))))))))..))))))...... ( -28.40, z-score = -0.81, R) >droWil1.scaffold_180777 650103 91 - 4753960 UUAAUUUAUUUUGUUUGGUUUGCCUUGGUUUUUUCCUUUUCAUUUUGCCAUUUAAUUAAAAAAGUUCUUUUCUUAAAGCAGCACUUUUGGA---------------------------- ..........(((..((((.((....((......))....))....))))..)))((((((..(((((((....)))).)))..)))))).---------------------------- ( -9.80, z-score = 0.80, R) >droSim1.chrX 15396517 116 - 17042790 UCAUAUUGUUGUGGUUGGUUGCCUGGUGCUUAGAGGCCCAAGUUCUUCGAUGGAAUC---AAAUUCCCAUAUGGAAUUUGGUGUUUCUCGAAAGAGAUUGAUUCCCUCGGCGGGAAUUC .((((....))))(((((..((.(((.(((....)))))).))...)))))...(((---(((((((.....))))))))))...((((....))))..(((((((.....))))))). ( -37.00, z-score = -1.75, R) >droSec1.super_8 2238607 116 - 3762037 UCAUAUUGUUGUGGUUGGUUGCCUGGUGCUUAGAGGCCCAAGUUCUUCGACGGAAUC---AAAUUCCCAUAUGGAAUUUGGUGUUUCUCGAAAGAGAUUGAUUCCCUCGGCGGGAAUUC .((((....))))(((((..((.(((.(((....)))))).))...)))))...(((---(((((((.....))))))))))...((((....))))..(((((((.....))))))). ( -38.90, z-score = -2.20, R) >droYak2.chrX 10359633 112 + 21770863 GCAUAUUGUUGUGGUUG----CUUUGUGCUUAGAGGCCCAAGUUCUUCGACCGAAUC---AAAUUCCCAUAUGGAAUUCUGUGUUUCUCCAAAGAGAUUGAUUCCCACAGCGGGAAUUC .....(((((((((..(----(((.(.(((....)))).)))).........(((((---(((((((.....)))))........((((....))))))))))))))))))))...... ( -28.10, z-score = -0.70, R) >droEre2.scaffold_4690 10145609 112 - 18748788 UCAUAUUGUUGUGGUUG----CUUUGGGCUUAGGGGCACAAGUUCUUCGACGGAAUC---AAAUUCCCAUAUGGAAUUUUGUGUUUCGCAAAAGAGAUUGAUUCCCACAGCGGGAAUUC .....((((((((((((----....((((((.(.....)))))))..))))((((((---((.(((((....))..(((((((...)))))))))).))))))))))))))))...... ( -32.30, z-score = -1.47, R) >consensus UCAUAUUGUUGUGGUUGG___CCUUGUGCUUAGAGGCCCAAGUUCUUCGACGGAAUC___AAAUUCCCAUAUGGAAUUUGGUGUUUCUCGAAAGAGAUUGAUUCCCUCAGCGGGAAUUC .((((....))))...................((((((((((((((.....(((((......))))).....))))))))).)))))............(((((((.....))))))). (-14.58 = -16.65 + 2.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:52 2011