| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,012,017 – 20,012,092 |
| Length | 75 |
| Max. P | 0.981578 |
| Location | 20,012,017 – 20,012,092 |
|---|---|
| Length | 75 |
| Sequences | 4 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 90.44 |
| Shannon entropy | 0.15484 |
| G+C content | 0.55523 |
| Mean single sequence MFE | -19.47 |
| Consensus MFE | -15.46 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.981578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20012017 75 - 22422827 ACCACUAACAAACACGGCGGCUCUUAAUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACUUCCGCCAAAUCAG ...............(((((......((((((....))))))....((((....)))).....)))))....... ( -23.20, z-score = -4.05, R) >droSec1.super_8 2235910 74 - 3762037 ACCACUAACAAACACGGCGGCUCCUACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUAC-UCCGCCAAAUCAG ...............(((((..(((..((((((..............))))))..)))...-.)))))....... ( -21.94, z-score = -3.52, R) >droYak2.chrX 10357595 75 + 21770863 ACCACUAACAAACACGACCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUAAUUCCGCCAAAUCAG ...........................(((((((...(((................)))...)))))))...... ( -14.19, z-score = -1.95, R) >droEre2.scaffold_4690 10143329 75 - 18748788 GCCACCCACAAACAAGGUCGCUCUCAGUGGCGGACACGCCAUAAAUCCCGCCACCAGGUACUUCCGCCAAAUCAG ((.(((.........))).)).....(((((((..............)))))))..(((......)))....... ( -18.54, z-score = -2.34, R) >consensus ACCACUAACAAACACGGCCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACUUCCGCCAAAUCAG ...............(((((.......(((((....))))).......((((....))))...)))))....... (-15.46 = -16.27 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:51 2011