| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,997,703 – 19,997,755 |
| Length | 52 |
| Max. P | 0.627658 |
| Location | 19,997,703 – 19,997,755 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 60.89 |
| Shannon entropy | 0.65289 |
| G+C content | 0.57819 |
| Mean single sequence MFE | -17.82 |
| Consensus MFE | -6.94 |
| Energy contribution | -7.98 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19997703 52 + 22422827 ----------GGAGCGGCGGCGGAGCAGUACCUUUGACACGUGGUUGCAACAGUCACCGCUG ----------..(((((.((((..(((..(((..........))))))..).))).))))). ( -17.80, z-score = -0.52, R) >droSec1.super_316 7014 52 + 14992 ----------GGAGCGGCGGCGGAGCAGUUUCUUUGACACGUGGUUGCACCAGUCACCGCUG ----------..(((((.(((((.(((((..(........)..))))).)).))).))))). ( -18.20, z-score = -0.62, R) >droYak2.chrX 10346627 52 - 21770863 ----------GCGGUGGCGGUGGAGCAGUUGCUUUGACACGUGGUUGCACCAGUCACCGCUG ----------((((((((..(((.((((..((........))..)))).))))))))))).. ( -25.90, z-score = -2.65, R) >droEre2.scaffold_4690 10133124 50 + 18748788 ------------GCAGGGGACGGAGUAGUUCCUUUGACACGUGGUUGCACCAGUCAACGCCG ------------((.((((((......))))))(((((..(((....)))..))))).)).. ( -14.50, z-score = -0.32, R) >droWil1.scaffold_180777 4066533 62 - 4753960 AAGUGUCUUUGAUUUCGAUUCGAAAAGUCAUUGCUGCCUGAUGGUAGUAAAAUCCAUCCCAA .........((((((((...))))..))))((((((((....))))))))............ ( -12.70, z-score = -2.07, R) >consensus __________GGAGCGGCGGCGGAGCAGUUCCUUUGACACGUGGUUGCACCAGUCACCGCUG ............(((((.(((((.(((((..(........)..))))).)).))).))))). ( -6.94 = -7.98 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:50 2011