| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,959,951 – 19,960,054 |
| Length | 103 |
| Max. P | 0.572975 |
| Location | 19,959,951 – 19,960,054 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.23 |
| Shannon entropy | 0.26211 |
| G+C content | 0.38831 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -16.74 |
| Energy contribution | -16.93 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19959951 103 + 22422827 CAAUAUUCCUUGGAGCAUUUGUACCAAUAAAAUCAGUGUAAUUAAUUAAAUUAAGACACAGCAAAUUCGUCUUUUCGAA-------------CUGAGGCCAAGUGCUCCUGGGCCA .......(((.((((((((((..(((.........((((..(((((...))))).))))......((((......))))-------------.)).)..)))))))))).)))... ( -26.60, z-score = -2.76, R) >droEre2.scaffold_4690 10105396 102 + 18748788 CAACACUCCUCGGAGCAUUUGCAGCAAUAAAAUCAAUGUAAUUAAUUAAAUUAGGACAGAGUAAAUCCGUCUUUUCGAA-------------GUGUC-CUCAGUGCUCCUGGGCCA .......(((.((((((((((((.............)))))...........((((((((.....))((......))..-------------.))))-))..))))))).)))... ( -22.52, z-score = -1.24, R) >droYak2.chrX 10317671 116 - 21770863 CAAUAUUCCUUGGAGCAUUUGUACCAAUAAAAUCAAUGUAAUUAAUUAAAUUAAGACAGAGGAAAUUCGUCUUUUCGAAACCAUCUCACUGCUCAACACUCACUGCUCCUGGGCCA .......(((.(((((((((((....))))).......................(((((.(((..((((......))))....)))..))).)).........)))))).)))... ( -19.30, z-score = -0.65, R) >droSec1.super_8 2186283 102 + 3762037 CAAUAUUCCUCGGAGCAUUUCUACCAAUAAAAUCAAUGUAAUUAAUUAAAUUAAGACAGAGCAAAUUCGUCUUUUCGAA-------------CUGCC-CGCAGUGCUCCUGGGCCA .......(((.((((((((.(...............(((..(((((...))))).)))(.(((..((((......))))-------------.))).-)).)))))))).)))... ( -20.70, z-score = -1.54, R) >consensus CAAUAUUCCUCGGAGCAUUUGUACCAAUAAAAUCAAUGUAAUUAAUUAAAUUAAGACAGAGCAAAUUCGUCUUUUCGAA_____________CUGAC_CUCAGUGCUCCUGGGCCA .......(((.((((((((...................(((((.....)))))((((.((.....)).)))).............................)))))))).)))... (-16.74 = -16.93 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:45 2011